标题
Knowing and Naming: Phage Annotation and Nomenclature for Phage Therapy
作者
关键词
-
出版物
CLINICAL INFECTIOUS DISEASES
Volume 77, Issue Supplement_5, Pages S352-S359
出版商
Oxford University Press (OUP)
发表日期
2023-11-07
DOI
10.1093/cid/ciad539
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Fast and accurate protein structure search with Foldseek
- (2023) Michel van Kempen et al. NATURE BIOTECHNOLOGY
- MgCod: Gene Prediction in Phage Genomes with Multiple Genetic Codes
- (2023) Aaron Pfennig et al. JOURNAL OF MOLECULAR BIOLOGY
- Corrigendum: VirionFinder: Identification of Complete and Partial Prokaryote Virus Virion Protein From Virome Data Using the Sequence and Biochemical Properties of Amino Acids
- (2022) Zhencheng Fang et al. Frontiers in Microbiology
- ColabFold: making protein folding accessible to all
- (2022) Milot Mirdita et al. NATURE METHODS
- Phage-antibiotic combination is a superior treatment against Acinetobacter baumannii in a preclinical study
- (2022) Fernando L. Gordillo Altamirano et al. EBioMedicine
- Identification of Phage Receptor-Binding Protein Sequences with Hidden Markov Models and an Extreme Gradient Boosting Classifier
- (2022) Dimitri Boeckaerts et al. Viruses-Basel
- Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software
- (2022) Tue Kjærgaard Nielsen et al. MOLECULAR ECOLOGY
- Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins
- (2021) Dimitri Boeckaerts et al. Scientific Reports
- Phage φAB6-Borne Depolymerase Combats Acinetobacter baumannii Biofilm Formation and Infection
- (2021) Md. Shahed-Al-Mahmud et al. Antibiotics-Basel
- MultiPhATE2: code for functional annotation and comparison of phage genomes
- (2021) Carol L Ecale Zhou et al. G3-Genes Genomes Genetics
- BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains
- (2021) Adam J. Hockenberry et al. PeerJ
- Highly accurate protein structure prediction with AlphaFold
- (2021) John Jumper et al. NATURE
- tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
- (2021) Patricia P Chan et al. NUCLEIC ACIDS RESEARCH
- AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
- (2021) Michael Feldgarden et al. Scientific Reports
- VFDB 2022: a general classification scheme for bacterial virulence factors
- (2021) Bo Liu et al. NUCLEIC ACIDS RESEARCH
- Double-Layer Agar (DLA) Modifications for the First Step of the Phage-Antibiotic Synergy (PAS) Identification
- (2021) Xymena Stachurska et al. Antibiotics-Basel
- Diversity and Function of Phage Encoded Depolymerases
- (2020) Leandra E. Knecht et al. Frontiers in Microbiology
- PVPred-SCM: Improved Prediction and Analysis of Phage Virion Proteins Using a Scoring Card Method
- (2020) Phasit Charoenkwan et al. Cells
- The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks
- (2020) Nature Microbiology
- Metaviral SPAdes: assembly of viruses from metagenomic data
- (2020) Dmitry Antipov et al. BIOINFORMATICS
- Standardized bacteriophage purification for personalized phage therapy
- (2020) Tiffany Luong et al. Nature Protocols
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes
- (2020) Stephen Nayfach et al. NATURE BIOTECHNOLOGY
- Bacteriophages as Environmental Reservoirs of Antibiotic Resistance
- (2019) William Calero-Cáceres et al. TRENDS IN MICROBIOLOGY
- PHANOTATE: a novel approach to gene identification in phage genomes
- (2019) Katelyn McNair et al. BIOINFORMATICS
- MyDGR: a server for identification and characterization of diversity-generating retroelements
- (2019) Fatemeh Sharifi et al. NUCLEIC ACIDS RESEARCH
- Viruses as key reservoirs of antibiotic resistance genes in the environment
- (2019) Didier Debroas et al. ISME Journal
- A Novel Polysaccharide Depolymerase Encoded by the Phage SH-KP152226 Confers Specific Activity Against Multidrug-Resistant Klebsiella pneumoniae via Biofilm Degradation
- (2019) Yunqiang Wu et al. Frontiers in Microbiology
- PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine
- (2018) Balachandran Manavalan et al. Frontiers in Microbiology
- A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage
- (2018) Sean Benler et al. Microbiome
- MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
- (2017) Martin Steinegger et al. NATURE BIOTECHNOLOGY
- Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
- (2017) Elliot J Lefkowitz et al. NUCLEIC ACIDS RESEARCH
- How to Name and Classify Your Phage: An Informal Guide
- (2017) Evelien Adriaenssens et al. Viruses-Basel
- Bacteriophages Contribute to the Spread of Antibiotic Resistance Genes among Foodborne Pathogens of the Enterobacteriaceae Family – A Review
- (2017) Anna Colavecchio et al. Frontiers in Microbiology
- Bacteriophage evolution differs by host, lifestyle and genome
- (2017) Travis N. Mavrich et al. Nature Microbiology
- Two T7-like Bacteriophages, K5-2 and K5-4, Each Encodes Two Capsule Depolymerases: Isolation and Functional Characterization
- (2017) Pei-Fang Hsieh et al. Scientific Reports
- PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data
- (2017) Julian R. Garneau et al. Scientific Reports
- Prophages mediate defense against phage infection through diverse mechanisms
- (2016) Joseph Bondy-Denomy et al. ISME Journal
- Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
- (2016) François Enault et al. ISME Journal
- Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation
- (2016) Ana Laura Grazziotin et al. NUCLEIC ACIDS RESEARCH
- Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
- (2016) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- The Tailocin Tale: Peeling off Phage Tails
- (2015) Maarten G.K. Ghequire et al. TRENDS IN MICROBIOLOGY
- Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9
- (2015) Alexandra L. Bryson et al. mBio
- Stop codon reassignments in the wild
- (2014) N. N. Ivanova et al. SCIENCE
- Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
- (2013) Sheetal R. Modi et al. NATURE
- UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
- (2013) J. H. Campbell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of the ELPhiS Prophage from Salmonella enterica Serovar Enteritidis Strain LK5
- (2012) L. Farris Hanna et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- PHACTS, a computational approach to classifying the lifestyle of phages
- (2012) Katelyn McNair et al. BIOINFORMATICS
- PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
- (2012) Sajia Akhter et al. NUCLEIC ACIDS RESEARCH
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now