Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins
出版年份 2021 全文链接
标题
Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins
作者
关键词
-
出版物
Scientific Reports
Volume 11, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-01-14
DOI
10.1038/s41598-021-81063-4
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Predicting Bacteriophage Enzymes and Hydrolases by Using Combined Features
- (2020) Hong-Fei Li et al. Frontiers in Bioengineering and Biotechnology
- Phage Therapy in the Year 2035
- (2020) Jean-Paul Pirnay Frontiers in Microbiology
- Seeker: alignment-free identification of bacteriophage genomes by deep learning
- (2020) Noam Auslander et al. NUCLEIC ACIDS RESEARCH
- Engineering of receptor-binding proteins in bacteriophages and phage tail-like bacteriocins
- (2019) Dorien Dams et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- virMine: automated detection of viral sequences from complex metagenomic samples
- (2019) Andrea Garretto et al. PeerJ
- ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples
- (2019) Ardi Tampuu et al. PLoS One
- Engineering Phage Host-Range and Suppressing Bacterial Resistance through Phage Tail Fiber Mutagenesis
- (2019) Kevin Yehl et al. CELL
- The global preclinical antibacterial pipeline
- (2019) Ursula Theuretzbacher et al. NATURE REVIEWS MICROBIOLOGY
- Reprogramming Bacteriophage Host Range through Structure-Guided Design of Chimeric Receptor Binding Proteins
- (2019) Matthew Dunne et al. Cell Reports
- Modeling the Architecture of Depolymerase-Containing Receptor Binding Proteins in Klebsiella Phages
- (2019) Agnieszka Latka et al. Frontiers in Microbiology
- iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
- (2018) Zhen Chen et al. BIOINFORMATICS
- Narrow-spectrum antibacterial agents
- (2018) Roberta J. Melander et al. MedChemComm
- Thousands of Novel Endolysins Discovered in Uncultured Phage Genomes
- (2018) Iris Fernández-Ruiz et al. Frontiers in Microbiology
- MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins
- (2018) Deyvid Amgarten et al. Frontiers in Genetics
- Computational prediction of inter-species relationships through omics data analysis and machine learning
- (2018) Diogo Manuel Carvalho Leite et al. BMC BIOINFORMATICS
- Klebsiella Phage ΦK64-1 Encodes Multiple Depolymerases for Multiple Host Capsular Types
- (2017) Yi-Jiun Pan et al. JOURNAL OF VIROLOGY
- Evolved distal tail carbohydrate binding modules of L actobacillus phage J-1: a novel type of anti-receptor widespread among lactic acid bacteria phages
- (2017) Maria-Eugenia Dieterle et al. MOLECULAR MICROBIOLOGY
- Database resources of the National Center for Biotechnology Information
- (2017) et al. NUCLEIC ACIDS RESEARCH
- Bacteriophage T5 tail tube structure suggests a trigger mechanism for Siphoviridae DNA ejection
- (2017) Charles-Adrien Arnaud et al. Nature Communications
- Phage Tail–Like Bacteriocins
- (2017) Dean Scholl Annual Review of Virology
- Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
- (2016) Nathan A. Ahlgren et al. NUCLEIC ACIDS RESEARCH
- UniProt: the universal protein knowledgebase
- (2016) NUCLEIC ACIDS RESEARCH
- HostPhinder: A Phage Host Prediction Tool
- (2016) Julia Villarroel et al. Viruses-Basel
- Conformational Changes Leading to T7 DNA Delivery upon Interaction with the Bacterial Receptor
- (2015) Verónica A. González-García et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structural remodeling of bacteriophage T4 and host membranes during infection initiation
- (2015) Bo Hu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing
- (2015) Hiroki Ando et al. Cell Systems
- UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches
- (2014) B. E. Suzek et al. BIOINFORMATICS
- Phage–host interplay: examples from tailed phages and Gram-negative bacterial pathogens
- (2014) Soraya Chaturongakul et al. Frontiers in Microbiology
- Revenge of the phages: defeating bacterial defences
- (2013) Julie E. Samson et al. NATURE REVIEWS MICROBIOLOGY
- Phage–bacteria infection networks
- (2012) Joshua S. Weitz et al. TRENDS IN MICROBIOLOGY
- Exploring the viral world through metagenomics
- (2011) Karyna Rosario et al. Current Opinion in Virology
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- Federal Funding for the Study of Antimicrobial Resistance in Nosocomial Pathogens: No ESKAPE
- (2008) Louis B. Rice JOURNAL OF INFECTIOUS DISEASES
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started