The Gut Microbiome Responds Progressively to Fat and/or Sugar-Rich Diets and Is Differentially Modified by Dietary Fat and Sugar

Different Alterations in Gut Microbiota between Bifidobacterium longum and Fecal Microbiota Transplantation Treatments in Propionic Acid Rat Model of Autism

(2022) Turki S. Abujamel et al.   Nutrients

Disease-associated dysbiosis and potential therapeutic role of Akkermansia muciniphila, a mucus degrading bacteria of gut microbiome

(2022) Vidushi Aggarwal et al.   FOLIA MICROBIOLOGICA

Longitudinal 16S rRNA Sequencing Reveals Relationships among Alterations of Gut Microbiota and Nonalcoholic Fatty Liver Disease Progression in Mice

(2022) Aoxiang Zhuge et al.   Microbiology Spectrum

Modulation of gut microbiota by bioactive compounds for prevention and management of type 2 diabetes

(2022) Basista Rabina Sharma et al.   BIOMEDICINE & PHARMACOTHERAPY

Multi-omic Analysis of the Gut Microbiome in Rats with Lithium-Pilocarpine-Induced Temporal Lobe Epilepsy

(2022) Maria Eduarda T. Oliveira et al.   MOLECULAR NEUROBIOLOGY

Akkermansia muciniphila and Gut Immune System: A Good Friendship That Attenuates Inflammatory Bowel Disease, Obesity, and Diabetes

(2022) Vanessa Fernandes Rodrigues et al.   Frontiers in Immunology

Influence of Foods and Nutrition on the Gut Microbiome and Implications for Intestinal Health

(2022) Ping Zhang   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Diet, microbiota, and the mucus layer: The guardians of our health

(2022) Francesco Suriano et al.   Frontiers in Immunology

Gut Microbiota in Nutrition and Health with a Special Focus on Specific Bacterial Clusters

(2022) Lucas R. F. Bresser et al.   Cells

Host-microbiome interactions: Gut-Liver axis and its connection with other organs

(2022) Swadha Anand et al.   npj Biofilms and Microbiomes

Combined Physical Exercise and Diet: Regulation of Gut Microbiota to Prevent and Treat of Metabolic Disease: A Review

(2022) Li Zhang et al.   Nutrients

Ecology-guided prediction of cross-feeding interactions in the human gut microbiome

(2021) Akshit Goyal et al.   Nature Communications

Modulating the Microbiota as a Therapeutic Intervention for Type 2 Diabetes

(2021) M. Nazmul Huda et al.   Frontiers in Endocrinology

Gut Microbiota and NAFLD: Pathogenetic Mechanisms, Microbiota Signatures, and Therapeutic Interventions

(2021) Tomas Hrncir et al.   Microorganisms

Gut microbiota relieves inflammation in the substantia nigra of chronic Parkinson's disease by protecting the function of dopamine neurons

(2021) Tian Zhang et al.   Experimental and Therapeutic Medicine

Dietary fructose feeds hepatic lipogenesis via microbiota-derived acetate

(2020) Steven Zhao et al.   NATURE

Protective effects of Akkermansia muciniphila on cognitive deficits and amyloid pathology in a mouse model of Alzheimer’s disease

(2020) Zihao Ou et al.   Nutrition & Diabetes

Modulation of the gut microbiota represents a new management for non-alcoholic fatty liver disease

(2020) Farnush Bakhshimoghaddam et al.   Hepatobiliary Surgery and Nutrition

Intestinimonas-like bacteria are important butyrate producers that utilize Nε-fructosyllysine and lysine in formula-fed infants and adults

(2020) Thi Phuong Nam Bui et al.   Journal of Functional Foods

Analysis of compositions of microbiomes with bias correction

(2020) Huang Lin et al.   Nature Communications

Effects of dietary fat on gut microbiota and faecal metabolites, and their relationship with cardiometabolic risk factors: a 6-month randomised controlled-feeding trial

(2019) Yi Wan et al.   GUT

The role of short-chain fatty acids in microbiota–gut–brain communication

(2019) Boushra Dalile et al.   Nature Reviews Gastroenterology & Hepatology

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

The Landscape of Genetic Content in the Gut and Oral Human Microbiome

(2019) Braden T. Tierney et al.   Cell Host & Microbe

Food Components and Dietary Habits: Keys for a Healthy Gut Microbiota Composition

(2019) Rinninella et al.   Nutrients

Intestinal Microbial and Metabolic Profiling of Mice Fed with High-Glucose and High-Fructose Diets

(2018) João C. P. Silva et al.   JOURNAL OF PROTEOME RESEARCH

High-Glucose or -Fructose Diet Cause Changes of the Gut Microbiota and Metabolic Disorders in Mice without Body Weight Change

(2018) Moon Do et al.   Nutrients

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis

(2017) Jaeyun Sung et al.   Nature Communications

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

(2017) André M. Comeau et al.   mSystems

Are We Really Vastly Outnumbered? Revisiting the Ratio of Bacterial to Host Cells in Humans

(2016) Ron Sender et al.   CELL

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites

(2016) Ara Koh et al.   CELL

Harryflintia acetispora gen. nov., sp. nov., isolated from chicken caecum

(2016)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Colonic Microbiome and Epithelial Transcriptome Are Altered in Rats Fed a High-Protein Diet Compared with a Normal-Protein Diet

(2016) Chunlong Mu et al.   JOURNAL OF NUTRITION

The gut microbial community in metabolic syndrome patients is modified by diet

(2016) Carmen Haro et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Akkermansia muciniphila Adheres to Enterocytes and Strengthens the Integrity of the Epithelial Cell Layer

(2015) Justus Reunanen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbiota-Generated Metabolites Promote Metabolic Benefits via Gut-Brain Neural Circuits

(2014) Filipe De Vadder et al.   CELL

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Characterization of fecal microbial communities in patients with liver cirrhosis

(2011) Yanfei Chen et al.   HEPATOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity

(2009) Marie A. Hildebrandt et al.   GASTROENTEROLOGY