Characterisation of the complete mitochondrial genome of Taraxacum mongolicum revealed five repeat-mediated recombinations

Taraxacum mongolicum extract inhibited malignant phenotype of triple-negative breast cancer cells in tumor-associated macrophages microenvironment through suppressing IL-10 / STAT3 / PD-L1 signaling pathways

(2021) Xin-Xin Deng et al.   JOURNAL OF ETHNOPHARMACOLOGY

Analysis of mitochondrial recombination in the male sterile Brassica juncea cybrid Og1 and identification of the molecular basis of fertility reversion

(2021) Naresh Vasupalli et al.   PLANT MOLECULAR BIOLOGY

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Assembly of the complete mitochondrial genome of an endemic plant, Scutellaria tsinyunensis, revealed the existence of two conformations generated by a repeat-mediated recombination

(2021) Jingling Li et al.   PLANTA

Comprehensive analysis of complete mitochondrial genome of Sapindus mukorossi Gaertn.: an important industrial oil tree species in China

(2021) Xin Wang et al.   INDUSTRIAL CROPS AND PRODUCTS

Assembly of the Complete Mitochondrial Genome of Chinese Plum (Prunus salicina): Characterization of Genome Recombination and RNA Editing Sites

(2021) Bo Fang et al.   Genes

RNA Editing and Its Roles in Plant Organelles

(2021) Wei Hao et al.   Frontiers in Genetics

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Genomic architectural variation of plant mitochondria—A review of multichromosomal structuring

(2020) Zhi‐Qiang Wu et al.   Journal of Systematics and Evolution

Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists

(2020) D. N. U. Naranpanawa et al.   Scientific Reports

Evaluation of hyperaccumulation potentials to cadmium (Cd) in six ornamental species (compositae)

(2019) Zhouli Liu et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Apollo: Democratizing genome annotation

(2019) Nathan A. Dunn et al.   PLoS Computational Biology

Evolution and diversification of kiwifruit mitogenomes through extensive whole-genome rearrangement and mosaic loss of intergenic sequences in a highly variable region

(2019) Shuaibin Wang et al.   Genome Biology and Evolution

Comparative phytochemical, cytotoxicity, antioxidant and haemostatic studies of Taraxacum officinale root preparations

(2019) Dariusz Jedrejek et al.   FOOD AND CHEMICAL TOXICOLOGY

CPGAVAS2, an integrated plastome sequence annotator and analyzer

(2019) Linchun Shi et al.   NUCLEIC ACIDS RESEARCH

The alternative reality of plant mitochondrial DNA: One ring does not rule them all

(2019) Alexander Kozik et al.   PLoS Genetics

Plant Organelle Genome Replication

(2019) Stewart A. Morley et al.   Plants-Basel

PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

(2019) Dong Zhang et al.   Molecular Ecology Resources

HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching

(2018) Guiqi Bi et al.   GENOMICS

Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria

(2018) Alejandro A. Edera et al.   PLANT MOLECULAR BIOLOGY

The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination

(2018) Shanshan Dong et al.   BMC GENOMICS

Molecular and Functional Diversity of RNA Editing in Plant Mitochondria

(2018) Wei Tang et al.   MOLECULAR BIOTECHNOLOGY

Homologous recombination changes the context of Cytochrome b transcription in the mitochondrial genome of Silene vulgaris KRA

(2018) Helena Štorchová et al.   BMC GENOMICS

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Identification of Symmetrical RNA Editing Events in the Mitochondria of Salvia miltiorrhiza by Strand-specific RNA Sequencing

(2017) Bin Wu et al.   Scientific Reports

The role of mitochondria in plant development and stress tolerance

(2016) Katie L. Liberatore et al.   FREE RADICAL BIOLOGY AND MEDICINE

RNA Editing and Its Molecular Mechanism in Plant Organelles

(2016) Mizuho Ichinose et al.   Genes

Sources of inversion variation in the small single copy (SSC) region of chloroplast genomes

(2015) Joseph F. Walker et al.   AMERICAN JOURNAL OF BOTANY

Insights into chloroplast biogenesis and development

(2015) Barry J. Pogson et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

Taraxacum officinale and related species—An ethnopharmacological review and its potential as a commercial medicinal plant

(2015) M. Martinez et al.   JOURNAL OF ETHNOPHARMACOLOGY

Identification, quantification, spatiotemporal distribution and genetic variation of major latex secondary metabolites in the common dandelion (Taraxacum officinale agg.)

(2015) Meret Huber et al.   PHYTOCHEMISTRY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

350 My of Mitochondrial Genome Stasis in Mosses, an Early Land Plant Lineage

(2014) Yang Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

REDItools: high-throughput RNA editing detection made easy

(2013) Ernesto Picardi et al.   BIOINFORMATICS

Hybrid breeding in wheat: technologies to improve hybrid wheat seed production

(2013) Ryan Whitford et al.   JOURNAL OF EXPERIMENTAL BOTANY

One ring to rule them all? Genome sequencing provides new insights into the ‘master circle’ model of plant mitochondrial DNA structure

(2013) Daniel B. Sloan   NEW PHYTOLOGIST

ICPH 2671 - the world's first commercial food legume hybrid

(2013) Kul Bhushan Saxena et al.   PLANT BREEDING

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Evidence against Equimolarity of Large Repeat Arrangements and a Predominant Master Circle Structure of the Mitochondrial Genome from a Monkeyflower (Mimulus guttatus) Lineage with Cryptic CMS

(2012) Jeffrey P. Mower et al.   Genome Biology and Evolution

Diverse biological activities of dandelion

(2012) Marta González-Castejón et al.   NUTRITION REVIEWS

Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates

(2012) Daniel B. Sloan et al.   PLOS BIOLOGY

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats

(2011) Andrew J. Alverson et al.   PLoS One

Extensive Loss of RNA Editing Sites in Rapidly Evolving Silene Mitochondrial Genomes: Selection vs. Retroprocessing as the Driving Force

(2010) D. B. Sloan et al.   GENETICS

Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes

(2010) Einat Hazkani-Covo et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genome-based polymorphic microsatellite development and validation in the mosquito Aedes aegypti and application to population genetics in Haiti

(2009) Diane D Lovin et al.   BMC GENOMICS

Diversity of the Arabidopsis Mitochondrial Genome Occurs via Nuclear-Controlled Recombination Activity

(2009) Maria P. Arrieta-Montiel et al.   GENETICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

A newly found cadmium accumulator—Taraxacum mongolicum

(2008) Shuhe Wei et al.   JOURNAL OF HAZARDOUS MATERIALS