Comprehensive analysis of complete mitochondrial genome of Sapindus mukorossi Gaertn.: an important industrial oil tree species in China

A putative 2OG-Fe(II) oxygenase’s response to gibberellin deficiency is related to the internodal growth of columnar apples

(2021) Limin Wang et al.   ACTA PHYSIOLOGIAE PLANTARUM

DNA Repair and the Stability of the Plant Mitochondrial Genome

(2020) Nicolas Chevigny et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Zygnema circumcarinatum UTEX 1559 chloroplast and mitochondrial genomes provide insight into land plant evolution

(2020) Lauren M Orton et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evolution and diversification of kiwifruit mitogenomes through extensive whole-genome rearrangement and mosaic loss of intergenic sequences in a highly variable region

(2019) Shuaibin Wang et al.   Genome Biology and Evolution

The Role of Transposable Elements in Pongamia Unigenes and Protein Diversity

(2019) Rahul G. Shelke et al.   MOLECULAR BIOTECHNOLOGY

Complete mitochondrial genomes of the Spondias tuberosa Arr. Cam and Spondias mombin L. reveal highly repetitive DNA sequences

(2019) Gleica Martins et al.   GENE

A novel maize dwarf mutant generated by Ty1-copia LTR-retrotransposon insertion in Brachytic2 after spaceflight

(2019) Chuan Li et al.   PLANT CELL REPORTS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

The Roles of Mitochondrion in Intergenomic Gene Transfer in Plants: A Source and a Pool

(2018) Nan Zhao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

HMMER web server: 2018 update

(2018) Simon C Potter et al.   NUCLEIC ACIDS RESEARCH

The complete mitochondrial genome of Citrus sinensis

(2018) Fengwen Yu et al.   Mitochondrial DNA Part B-Resources

Molecular and Functional Diversity of RNA Editing in Plant Mitochondria

(2018) Wei Tang et al.   MOLECULAR BIOTECHNOLOGY

Editorial for Special Issue “Plant Mitochondria”

(2018) Nicolas Taylor   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Repeats of Unusual Size in Plant Mitochondrial Genomes: Identification, Incidence and Evolution

(2018) Emily L. Wynn et al.   G3-Genes Genomes Genetics

LTR-retrotransposons in plants: Engines of evolution

(2017) Leonardo Galindo-González et al.   GENE

Natural variation in fatty acid composition of Sapindus spp. seed oils

(2017) Caowen Sun et al.   INDUSTRIAL CROPS AND PRODUCTS

Reconstructing the plant mitochondrial genome for marker discovery: a case study using Pinus

(2017) Kevin Donnelly et al.   Molecular Ecology Resources

Prospects on the evolutionary mitogenomics of plants: A case study on the olive family (Oleaceae)

(2017) Céline Van de Paer et al.   Molecular Ecology Resources

Entire nucleotide sequences of Gossypium raimondii and G. arboreum mitochondrial genomes revealed A-genome species as cytoplasmic donor of the allotetraploid species

(2017) Z. Chen et al.   PLANT BIOLOGY

LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

(2017) Shujun Ou et al.   PLANT PHYSIOLOGY

Mitochondrial genome structure of photosynthetic eukaryotes

(2016) N. P. Yurina et al.   BIOCHEMISTRY-MOSCOW

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution

(2016) Wenhu Guo et al.   MOLECULAR BIOLOGY AND EVOLUTION

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features

(2016) Songtao Gui et al.   Scientific Reports

The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads

(2016) Jeremy R. Shearman et al.   Scientific Reports

Comparison of nuclear, plastid, and mitochondrial phylogenies and the origin of wild octoploid strawberry species

(2015) Rajanikanth Govindarajulu et al.   AMERICAN JOURNAL OF BOTANY

LTR retrotransposons, handy hitchhikers of plant regulation and stress response

(2015) Marie-Angèle Grandbastien   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

Resolving deep relationships of PACMAD grasses: a phylogenomic approach

(2015) Joseph L. Cotton et al.   BMC PLANT BIOLOGY

Horizontal gene transfer from a flowering plant to the insular pine Pinus canariensis (Chr. Sm. Ex DC in Buch)

(2015) B Wang et al.   HEREDITY

Optimization of evaporative extraction of natural emulsifier cum surfactant from Sapindus mukorossi —Characterization and cost analysis

(2015) Abhirup Basu et al.   INDUSTRIAL CROPS AND PRODUCTS

Deep phylogenetic incongruence in the angiosperm clade Rosidae

(2015) Miao Sun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Dynamic evolution ofGeraniummitochondrial genomes through multiple horizontal and intracellular gene transfers

(2015) Seongjun Park et al.   NEW PHYTOLOGIST

Miniaturized mitogenome of the parasitic plantViscum scurruloideumis extremely divergent and dynamic and has lost allnadgenes

(2015) Elizabeth Skippington et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Homologous recombination and retention of a single form of most genes shape the highly chimeric mitochondrial genome of a cybrid plant

(2014) M. Virginia Sanchez-Puerta et al.   NEW PHYTOLOGIST

RNA Editing in Plants and Its Evolution

(2013) Mizuki Takenaka et al.   Annual Review of Genetics

The “fossilized” mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

(2013) Aaron O Richardson et al.   BMC BIOLOGY

Evolution of mitochondrial gene content: loss of genes, tRNAs and introns between Gossypium harknessii and other plants

(2013) Binbin Lei et al.   PLANT SYSTEMATICS AND EVOLUTION

Massive Mitochondrial Gene Transfer in a Parasitic Flowering Plant Clade

(2013) Zhenxiang Xi et al.   PLoS Genetics

Phylogeography of Camellia taliensis (Theaceae) inferred from chloroplast and nuclear DNA: insights into evolutionary history and conservation

(2012) Yang Liu et al.   BMC EVOLUTIONARY BIOLOGY

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

Intraspecific variation in mitochondrial genome sequence, structure, and gene content inSilene vulgaris, an angiosperm with pervasive cytoplasmic male sterility

(2012) Daniel B. Sloan et al.   NEW PHYTOLOGIST

Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges

(2012) E. Butelli et al.   PLANT CELL

Transposon-Mediated Alteration of TaMATE1B Expression in Wheat Confers Constitutive Citrate Efflux from Root Apices

(2012) A. Tovkach et al.   PLANT PHYSIOLOGY

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

(2011) Jaime I Davila et al.   BMC BIOLOGY

Male Sterility-Inducing Mitochondrial Genomes: How Do They Differ?

(2011) Tomohiko Kubo et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Identification of a functional transposon insertion in the maize domestication gene tb1

(2011) Anthony Studer et al.   NATURE GENETICS

Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber

(2011) A. J. Alverson et al.   PLANT CELL

Comparing Two Bayesian Methods for Gene Tree/Species Tree Reconstruction: Simulations with Incomplete Lineage Sorting and Horizontal Gene Transfer

(2011) Yujin Chung et al.   SYSTEMATIC BIOLOGY

Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia

(2010) Daniel B Sloan et al.   BMC EVOLUTIONARY BIOLOGY

A scenario of mitochondrial genome evolution in maize based on rearrangement events

(2010) Aude Darracq et al.   BMC GENOMICS

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Comparative Analysis of Structural Diversity and Sequence Evolution in Plant Mitochondrial Genes Transferred to the Nucleus

(2009) S.-L. Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

(2009) J. P. Mower   NUCLEIC ACIDS RESEARCH

Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer

(2008) V. V. Goremykin et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit

(2008) H. Xiao et al.   SCIENCE