Compartment and Plant Identity Shape Tree Mycobiome in a Subtropical Forest

Plant‐microbiome interactions under a changing world: responses, consequences, and perspective

(2022) Pankaj Trivedi et al.   NEW PHYTOLOGIST

Dancing with Douglas‐fir: Determinism dominates fungal community assembly processes

(2022) Joseph D. Birch et al.   JOURNAL OF ECOLOGY

Plant identity strongly structures the root-associated fungal community in a diverse subtropical forest

(2021) Xing-Chun Li et al.   BASIC AND APPLIED ECOLOGY

Grazing Affects Bacterial and Fungal Diversities and Communities in the Rhizosphere and Endosphere Compartments of Leymus chinensis through Regulating Nutrient and Ion Distribution

(2021) Yurong Yang et al.   Microorganisms

Tree mycorrhizal type and tree diversity shape the forest soil microbiota

(2021) Bala Singavarapu et al.   ENVIRONMENTAL MICROBIOLOGY

Humus microhabitat affects distributions of soil fungi and bacteria in a temperate mountain forest

(2021) Nan Wang et al.   Ecology and Evolution

Fungal Endophytic Community and Diversity Associated with Desert Shrubs Driven by Plant Identity and Organ Differentiation in Extremely Arid Desert Ecosystem

(2021) Yiling Zuo et al.   Journal of Fungi

Comparative fungal diversity and dynamics in plant compartments at different developmental stages under root-zone restricted grapevines

(2021) Muhammad Salman Zahid et al.   BMC MICROBIOLOGY

Spatial and temporal differences in the community structure of endophytic fungi in the carnivorous plant Pinguicula moranensis (Lentibulariaceae)

(2021) Jesús E. Rueda-Almazán et al.   Fungal Ecology

Compartment Niche Shapes the Assembly and Network of Cannabis sativa-Associated Microbiome

(2021) Guangfei Wei et al.   Frontiers in Microbiology

Non-Specific Interactions of Rhizospheric Microbial Communities Support the Establishment of Mimosa acutistipula var. ferrea in an Amazon Rehabilitating Mineland

(2021) Paulo Henrique de Oliveira Costa et al.   Processes

Foliar Fungal Endophytes in a Tree Diversity Experiment Are Driven by the Identity but Not the Diversity of Tree Species

(2021) Stephan Kambach et al.   Life-Basel

Plant functional groups associate with distinct arbuscular mycorrhizal fungal communities

(2020) John Davison et al.   NEW PHYTOLOGIST

Distinct factors drive the assembly of quinoa-associated microbiomes along elevation

(2020) Zhiquan Cai et al.   PLANT AND SOIL

Host identity is more important in structuring bacterial epiphytes than endophytes in a tropical mangrove forest

(2020) Hui Yao et al.   FEMS MICROBIOLOGY ECOLOGY

Rhizosphere bacteria are more strongly related to plant root traits than fungi in temperate montane forests: insights from closed and open forest patches along an elevational gradient

(2020) Luis Merino-Martín et al.   PLANT AND SOIL

The Plant Microbiome: From Ecology to Reductionism and Beyond

(2020) Connor R. Fitzpatrick et al.   Annual Review of Microbiology

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Host selection shapes crop microbiome assembly and network complexity

(2020) Chao Xiong et al.   NEW PHYTOLOGIST

An investigation into whether effect of tree species on soil microbial community is related with deciduous property or leaf shape

(2020) Jian-Yong Zeng et al.   CATENA

Microbial communities in crop phyllosphere and root endosphere are more resistant than soil microbiota to fertilization

(2020) Anqi Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem

(2019) Hui Yao et al.   Microbiome

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Soil fungal assemblage complexity is dependent on soil fertility and dominated by deterministic processes

(2019) Junjie Guo et al.   NEW PHYTOLOGIST

Forest Soil Fungal Community Elevational Distribution Pattern and Their Ecological Assembly Processes

(2019) Yuyu Sheng et al.   Frontiers in Microbiology

Nitrogen enrichment suppresses other environmental drivers and homogenizes salt marsh leaf microbiome

(2018) Pedro Daleo et al.   ECOLOGY

Isolation source matters: sclerotia and ectomycorrhizal roots provide different views of genetic diversity in Cenococcum geophilum

(2018) Keisuke Obase et al.   MYCOLOGIA

Evolutionary history of mycorrhizal symbioses and global host plant diversity

(2018) Mark C. Brundrett et al.   NEW PHYTOLOGIST

Fertilization strategy can affect the estimation of soil nitrogen mineralization potential with chemical methods

(2018) Nicolas Wyngaard et al.   PLANT AND SOIL

Cover cropping and no-till increase diversity and symbiotroph:saprotroph ratios of soil fungal communities

(2018) Radomir Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Host preference and network properties in biotrophic plant-fungal associations

(2017) Sergei Põlme et al.   NEW PHYTOLOGIST

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

(2017) Francis M. Martin et al.   SCIENCE

Cover crops to increase soil microbial diversity and mitigate decline in perennial agriculture. A review

(2016) Eric Vukicevich et al.   Agronomy for Sustainable Development

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Analysis of the Fungal Diversity in Citrus Leaves with Greasy Spot Disease Symptoms

(2016) Ahmed Abdelfattah et al.   MICROBIAL ECOLOGY

Ericaceous plant-fungus network in a harsh alpine-subalpine environment

(2016) H. Toju et al.   MOLECULAR ECOLOGY

Diversity of root-endophytic Trichoderma from Malaysian Borneo

(2016) N. J. Cummings et al.   MYCOLOGICAL PROGRESS

Dimensions of biodiversity in the Earth mycobiome

(2016) Kabir G. Peay et al.   NATURE REVIEWS MICROBIOLOGY

Citizen science data reveal ecological, historical and evolutionary factors shaping interactions between woody hosts and wood-inhabiting fungi

(2016) Jacob Heilmann-Clausen et al.   NEW PHYTOLOGIST

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Revisiting the ‘Gadgil effect’: do interguild fungal interactions control carbon cycling in forest soils?

(2015) Christopher W. Fernandez et al.   NEW PHYTOLOGIST

The role of stochasticity differs in the assembly of soil- and root-associated fungal communities

(2015) Sarah Beck et al.   SOIL BIOLOGY & BIOCHEMISTRY

Occurrence of Ochroconis and Verruconis Species in Clinical Specimens from the United States

(2014) A. Giraldo et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Microbial genome-enabled insights into plant–microorganism interactions

(2014) David S. Guttman et al.   NATURE REVIEWS GENETICS

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Root-induced changes in nutrient cycling in forests depend on exudation rates

(2014) Huajun Yin et al.   SOIL BIOLOGY & BIOCHEMISTRY

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

Factors influencing communities of foliar fungal endophytes in riparian woody plants

(2013) Matthew K. Lau et al.   Fungal Ecology

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest

(2013) Hirokazu Toju et al.   PLoS One

Endophytic and pathogenic fungi of developing cranberry ovaries from flower to mature fruit: diversity and succession

(2012) Mariusz Tadych et al.   FUNGAL DIVERSITY

Foliar nutrients shape fungal endophyte communities in Western white pine (Pinus monticola) with implications for white-tailed deer herbivory

(2012) Beau G. Larkin et al.   Fungal Ecology

Protection of Arabidopsis thaliana against Leaf-Pathogenic Pseudomonas syringae by Sphingomonas Strains in a Controlled Model System

(2011) Gerd Innerebner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Belowground biodiversity effects of plant symbionts support aboveground productivity

(2011) Cameron Wagg et al.   ECOLOGY LETTERS

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Species Diversity, Distribution, and Genetic Structure of Endophytic and Epiphytic Trichoderma Associated with Banana Roots

(2010) Xiaomin Xia et al.   MICROBIAL ECOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework

(2009) Shubha N. Pandit et al.   ECOLOGY

Exploiting plant–microbe partnerships to improve biomass production and remediation

(2009) Nele Weyens et al.   TRENDS IN BIOTECHNOLOGY