Differentiated Evolutionary Strategies of Genetic Diversification in Atlantic and Pacific Thaumarchaeal Populations
出版年份 2022 全文链接
标题
Differentiated Evolutionary Strategies of Genetic Diversification in Atlantic and Pacific Thaumarchaeal Populations
作者
关键词
-
出版物
mSystems
Volume 7, Issue 3, Pages -
出版商
American Society for Microbiology
发表日期
2022-06-13
DOI
10.1128/msystems.01477-21
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
- (2021) Matthew R. Olm et al. NATURE BIOTECHNOLOGY
- Selective constraints on global plankton dispersal
- (2021) Ben A. Ward et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ecologically coherent population structure of uncultivated bacterioplankton
- (2021) Conny Sjöqvist et al. ISME Journal
- Microbial Community Resilience across Ecosystems and Multiple Disturbances
- (2021) Laurent Philippot et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns
- (2021) Jake L. Weissman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nationwide genomic atlas of soil-dwelling Listeria reveals effects of selection and population ecology on pangenome evolution
- (2021) Jingqiu Liao et al. Nature Microbiology
- A standardized archaeal taxonomy for the Genome Taxonomy Database
- (2021) Christian Rinke et al. Nature Microbiology
- Time series assessment of Thaumarchaeota ecotypes in Monterey Bay reveals the importance of water column position in predicting distribution–environment relationships
- (2020) Bradley B. Tolar et al. LIMNOLOGY AND OCEANOGRAPHY
- Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
- (2020) Alexander Crits-Christoph et al. ISME Journal
- Accumulation of ambient phosphate into the periplasm of marine bacteria is proton motive force dependent
- (2020) Nina A. Kamennaya et al. Nature Communications
- Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea
- (2020) Wei Qin et al. ISME Journal
- Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean
- (2020) Frank O. Aylward et al. mSystems
- Environmental fluctuations and their effects on microbial communities, populations, and individuals
- (2020) Jen Nguyen et al. FEMS MICROBIOLOGY REVIEWS
- Inferring bacterial recombination rates from large-scale sequencing datasets
- (2019) Mingzhi Lin et al. NATURE METHODS
- Integrated mobile genetic elements in Thaumarchaeota
- (2019) Mart Krupovic et al. ENVIRONMENTAL MICROBIOLOGY
- Phosphate uptake by the phosphonate transport system PhnCDE
- (2019) Raffaele Stasi et al. BMC MICROBIOLOGY
- Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus
- (2019) Paul M Berube et al. eLife
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
- (2019) Tom O Delmont et al. eLife
- GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
- (2019) Pierre-Alain Chaumeil et al. BIOINFORMATICS
- Global ecotypes in the ubiquitous marine clade SAR86
- (2019) Adrienne Hoarfrost et al. ISME Journal
- Fine-Scale Haplotype Structure Reveals Strong Signatures of Positive Selection in a Recombining Bacterial Pathogen
- (2019) Brian Arnold et al. MOLECULAR BIOLOGY AND EVOLUTION
- Patterns of thaumarchaeal gene expression in culture and diverse marine environments
- (2018) Paul Carini et al. ENVIRONMENTAL MICROBIOLOGY
- Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight
- (2018) Qian Liu et al. ISME Journal
- Keystone taxa as drivers of microbiome structure and functioning
- (2018) Samiran Banerjee et al. NATURE REVIEWS MICROBIOLOGY
- Spatiotemporal Dynamics of Ammonia-Oxidizing Thaumarchaeota in Distinct Arctic Water Masses
- (2018) Oliver Müller et al. Frontiers in Microbiology
- Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
- (2018) Christian M. K. Sieber et al. Nature Microbiology
- Homologous Recombination in Core Genomes Facilitates Marine Bacterial Adaptation
- (2018) Ying Sun et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Marine microbial metagenomes sampled across space and time
- (2018) Steven J. Biller et al. Scientific Data
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
- (2017) Matthew R Olm et al. ISME Journal
- Fundamental differences in diversity and genomic population structure between Atlantic and Pacific Prochlorococcus
- (2017) Nadav Kashtan et al. ISME Journal
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- Generalist species drive microbial dispersion and evolution
- (2017) Sira Sriswasdi et al. Nature Communications
- Nitrification and its influence on biogeochemical cycles from the equatorial Pacific to the Arctic Ocean
- (2016) Takuhei Shiozaki et al. ISME Journal
- Genetic drift, selection and the evolution of the mutation rate
- (2016) Michael Lynch et al. NATURE REVIEWS GENETICS
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Depth distribution of ammonia oxidation rates and ammonia-oxidizer community composition in the Sargasso Sea
- (2016) Silvia E. Newell et al. LIMNOLOGY AND OCEANOGRAPHY
- MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
- (2015) Yu-Wei Wu et al. BIOINFORMATICS
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Higher diversity and abundance of denitrifying microorganisms in environments than considered previously
- (2015) Wei Wei et al. ISME Journal
- Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean
- (2015) Alyson E. Santoro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota
- (2015) Cécile Gubry-Rangin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche
- (2015) M. J. Rosen et al. SCIENCE
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks
- (2015) W B Langdon BioData Mining
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Binning metagenomic contigs by coverage and composition
- (2014) Johannes Alneberg et al. NATURE METHODS
- Microbial oceanography and the Hawaii Ocean Time-series programme
- (2014) David M. Karl et al. NATURE REVIEWS MICROBIOLOGY
- Prochlorococcus: the structure and function of collective diversity
- (2014) Steven J. Biller et al. NATURE REVIEWS MICROBIOLOGY
- Bacterial transformation: distribution, shared mechanisms and divergent control
- (2014) Calum Johnston et al. NATURE REVIEWS MICROBIOLOGY
- Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
- (2014) N. Kashtan et al. SCIENCE
- Seasonal variation in the metratranscriptomes of a Thaumarchaeota population from SE USA coastal waters
- (2013) James T Hollibaugh et al. ISME Journal
- Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters
- (2013) M. Hugoni et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Patterns and architecture of genomic islands in marine bacteria
- (2012) Beatriz Fernández-Gómez et al. BMC GENOMICS
- ArchaealamoA gene diversity points to distinct biogeography of ammonia-oxidizingCrenarchaeotain the ocean
- (2012) Eva Sintes et al. ENVIRONMENTAL MICROBIOLOGY
- Partitioning ofThaumarchaeotapopulations along environmental gradients in high mountain lakes
- (2012) Jean-Christophe Auguet et al. FEMS MICROBIOLOGY ECOLOGY
- Lake microbial communities are resilient after a whole-ecosystem disturbance
- (2012) Ashley Shade et al. ISME Journal
- Population Genomics of Early Events in the Ecological Differentiation of Bacteria
- (2012) B. J. Shapiro et al. SCIENCE
- Fundamentals of Microbial Community Resistance and Resilience
- (2012) Ashley Shade et al. Frontiers in Microbiology
- Easyfig: a genome comparison visualizer
- (2011) M. J. Sullivan et al. BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current
- (2010) Alyson E. Santoro et al. ENVIRONMENTAL MICROBIOLOGY
- Patterns of Diversity in Marine Phytoplankton
- (2010) A. D. Barton et al. SCIENCE
- Prokaryotic Genomes and Diversity in Surface Ocean Waters: Interrogating the Global Ocean Sampling Metagenome
- (2009) E. J. Biers et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Fpocket: An open source platform for ligand pocket detection
- (2009) Vincent Le Guilloux et al. BMC BIOINFORMATICS
- Protein structure prediction on the Web: a case study using the Phyre server
- (2009) Lawrence A Kelley et al. Nature Protocols
- Genomic patterns of recombination, clonal divergence and environment in marine microbial populations
- (2008) Konstantinos T Konstantinidis et al. ISME Journal
- A comparison of homologous recombination rates in bacteria and archaea
- (2008) Michiel Vos et al. ISME Journal
- Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
- (2008) J Michael Beman et al. ISME Journal
- Adaptation from standing genetic variation
- (2007) R BARRETT et al. TRENDS IN ECOLOGY & EVOLUTION
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search