Time series assessment of Thaumarchaeota ecotypes in Monterey Bay reveals the importance of water column position in predicting distribution–environment relationships

Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column

(2019) Linta Reji et al.   ISME Journal

Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution

(2019) Minglei Ren et al.   ISME Journal

Depth distributions of Nitrite Reductase ( nirK ) Gene Variants Reveal Spatial Dynamics of Thaumarchaeal Ecotype Populations in Coastal Monterey Bay

(2019) Linta Reji et al.   ENVIRONMENTAL MICROBIOLOGY

Patterns of thaumarchaeal gene expression in culture and diverse marine environments

(2018) Paul Carini et al.   ENVIRONMENTAL MICROBIOLOGY

Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight

(2018) Qian Liu et al.   ISME Journal

Spatiotemporal Dynamics of Ammonia-Oxidizing Thaumarchaeota in Distinct Arctic Water Masses

(2018) Oliver Müller et al.   Frontiers in Microbiology

Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems

(2017) Nathan A. Ahlgren et al.   ENVIRONMENTAL MICROBIOLOGY

Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor

(2017) Alma E Parada et al.   ISME Journal

Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation

(2017) Alyson E. Santoro et al.   LIMNOLOGY AND OCEANOGRAPHY

Climate Variability and Change: Response of a Coastal Ocean Ecosystem

(2017) Francisco Chavez et al.   OCEANOGRAPHY

Decade-scale oceanographic fluctuation in Monterey Bay, California, 1989–2011

(2017) J. Timothy Pennington et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Contribution of ammonia oxidation to chemoautotrophy in Antarctic coastal waters

(2016) Bradley B Tolar et al.   ISME Journal

Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean

(2016) Eva Sintes et al.   Frontiers in Microbiology

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation

(2015) Barbara Bayer et al.   ISME Journal

Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia-oxidizing microorganisms in the dark northeast Pacific Ocean

(2015) Jason M. Smith et al.   LIMNOLOGY AND OCEANOGRAPHY

Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean

(2015) Alyson E. Santoro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

mice: Multivariate Imputation by Chained Equations inR

(2015) Stef van Buuren et al.   Journal of Statistical Software

Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters

(2014) Jason M Smith et al.   ISME Journal

Ammonium Uptake by Phytoplankton Regulates Nitrification in the Sunlit Ocean

(2014) Jason M. Smith et al.   PLoS One

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation

(2014) W. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell genomics shedding light on marine Thaumarchaeota diversification

(2013) Haiwei Luo et al.   ISME Journal

Seasonal variation in the metratranscriptomes of a Thaumarchaeota population from SE USA coastal waters

(2013) James T Hollibaugh et al.   ISME Journal

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

An Analysis of Thaumarchaeota Populations from the Northern Gulf of Mexico

(2013) Bradley B. Tolar et al.   Frontiers in Microbiology

Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea

(2012) Marie B Lund et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat

(2012) Steven J. Biller et al.   Frontiers in Microbiology

Differential photoinhibition of bacterial and archaeal ammonia oxidation

(2011) Stephanie N. Merbt et al.   FEMS MICROBIOLOGY LETTERS

Crenarchaeol tracks winter blooms of ammonia-oxidizing Thaumarchaeota in the coastal North Sea

(2011) Angela Pitcher et al.   LIMNOLOGY AND OCEANOGRAPHY

Phytoplankton succession and nitrogen utilization during the development of an upwelling bloom

(2011) SE Fawcett et al.   MARINE ECOLOGY PROGRESS SERIES

Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight

(2010) J. Michael Beman et al.   ENVIRONMENTAL MICROBIOLOGY

Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current

(2010) Alyson E. Santoro et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage

(2010) James T Hollibaugh et al.   ISME Journal

Abundances of crenarchaealamoAgenes and transcripts in the Pacific Ocean

(2009) Matthew J. Church et al.   ENVIRONMENTAL MICROBIOLOGY

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

(2008) J Michael Beman et al.   ISME Journal

Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic

(2008) Hélène Agogué et al.   NATURE