标题
Assembly of complete diploid-phased chromosomes from draft genome sequences
作者
关键词
-
出版物
G3-Genes Genomes Genetics
Volume 12, Issue 8, Pages -
出版商
Oxford University Press (OUP)
发表日期
2022-06-10
DOI
10.1093/g3journal/jkac143
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Diploid chromosome-scale assembly of the Muscadinia rotundifolia genome supports chromosome fusion and disease resistance gene expansion during Vitis and Muscadinia divergence
- (2021) Noé Cochetel et al. G3-Genes Genomes Genetics
- Rootstock influences the effect of grapevine leafroll‐associated viruses on berry development and metabolism via abscisic acid signalling
- (2021) Amanda M. Vondras et al. MOLECULAR PLANT PATHOLOGY
- Large structural variations in the haplotype‐resolved African cassava genome
- (2021) Ben N. Mansfeld et al. PLANT JOURNAL
- Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus
- (2020) Cheng Zou et al. Nature Communications
- Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions
- (2020) Peng Zhou et al. PLANT CELL
- Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle
- (2020) Wai Yee Low et al. Nature Communications
- De novo assembly of the cattle reference genome with single-molecule sequencing
- (2020) Benjamin D Rosen et al. GigaScience
- Telomere-to-telomere assembly of a complete human X chromosome
- (2020) Karen H. Miga et al. NATURE
- The genetic basis of sex determination in grapes
- (2020) Mélanie Massonnet et al. Nature Communications
- Chromosome-scale, haplotype-resolved assembly of human genomes
- (2020) Shilpa Garg et al. NATURE BIOTECHNOLOGY
- A critical comparison of technologies for a plant genome sequencing project
- (2019) Pirita Paajanen et al. GigaScience
- Diploid Genome Assembly of the Wine Grape Carménère
- (2019) Andrea Minio et al. G3-Genes Genomes Genetics
- A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds
- (2019) Andreas Wallberg et al. BMC GENOMICS
- The Whole-Genome Sequence of the Coral Acropora millepora
- (2019) Hua Ying et al. Genome Biology and Evolution
- Phased Diploid Genome Assemblies for Three Strains of Candida albicans from Oak Trees
- (2019) Jennafer A. P. Hamlin et al. G3-Genes Genomes Genetics
- Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads
- (2019) Huilong Du et al. Nature Communications
- A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution
- (2019) Lorenzo Barchi et al. Scientific Reports
- The genomic diversification of grapevine clones
- (2019) Amanda M. Vondras et al. BMC GENOMICS
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- MUMmer4: A fast and versatile genome alignment system
- (2018) Guillaume Marçais et al. PLoS Computational Biology
- Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
- (2018) Michael J. Roach et al. BMC BIOINFORMATICS
- De novo assembly of haplotype-resolved genomes with trio binning
- (2018) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences
- (2016) Gaik Tamazian et al. GigaScience
- ALLMAPS: robust scaffold ordering based on multiple maps
- (2015) Haibao Tang et al. GENOME BIOLOGY
- PacBio Sequencing and Its Applications
- (2015) Anthony Rhoads et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants
- (2014) Alex Di Genova et al. BMC PLANT BIOLOGY
- Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
- (2014) Rei Kajitani et al. GENOME RESEARCH
- Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species
- (2013) H. Hirakawa et al. DNA RESEARCH
- Reference-assisted chromosome assembly
- (2013) J. Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies
- (2012) S. Huang et al. GENOME RESEARCH
- A High Resolution Genetic Map Anchoring Scaffolds of the Sequenced Watermelon Genome
- (2012) Yi Ren et al. PLoS One
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
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