Rootstock influences the effect of grapevine leafroll‐associated viruses on berry development and metabolism via abscisic acid signalling

Drought tolerance of the grapevine, Vitis champinii cv. Ramsey, is associated with higher photosynthesis and greater transcriptomic responsiveness of abscisic acid biosynthesis and signaling

(2020) Noé Cochetel et al.   BMC PLANT BIOLOGY

Grapevine viruses: a multitude of diverse species with simple but overall poorly adopted management solutions in the vineyard

(2020) Marc Fuchs   JOURNAL OF PLANT PATHOLOGY

The genetic basis of sex determination in grapes

(2020) Mélanie Massonnet et al.   Nature Communications

Exogenous abscisic acid induces the lipid and flavonoid metabolism of tea plants under drought stress

(2020) Zhongshuai Gai et al.   Scientific Reports

Economic studies reinforce efforts to safeguard specialty crops in the United States

(2020) Marc Fuchs et al.   PLANT DISEASE

Chemical genetic identification of a lectin receptor kinase that transduces immune responses and interferes with abscisic acid signaling

(2019) Jiyoung Park et al.   PLANT JOURNAL

Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry Development

(2019) Andrea Minio et al.   G3-Genes Genomes Genetics

Diploid Genome Assembly of the Wine Grape Carménère

(2019) Andrea Minio et al.   G3-Genes Genomes Genetics

The different tolerance to magnesium deficiency of two grapevine rootstocks relies on the ability to cope with oxidative stress

(2019) Sonia Livigni et al.   BMC PLANT BIOLOGY

R-Loci Arrangement Versus Downy and Powdery Mildew Resistance Level: A Vitis Hybrid Survey

(2019) Elena Zini et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Respiratory Burst Oxidase Homolog D (RbohD) Cell and Tissue Distribution in Potato–Potato Virus Y (PVYNTN) Hypersensitive and Susceptible Reactions

(2019) Katarzyna Otulak-Kozieł et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The plant hypersensitive response: concepts, control and consequences

(2019) Peter Balint‐Kurti   MOLECULAR PLANT PATHOLOGY

The genomic diversification of grapevine clones

(2019) Amanda M. Vondras et al.   BMC GENOMICS

SCFSNIPER4 controls the turnover of two redundant TRAF proteins in plant immunity

(2018) Jianhua Huang et al.   PLANT JOURNAL

The Nicotianamine Synthase Gene Is a Useful Candidate for Improving the Nutritional Qualities and Fe-Deficiency Tolerance of Various Crops

(2018) Tomoko Nozoye   Frontiers in Plant Science

Hub Protein Controversy: Taking a Closer Look at Plant Stress Response Hubs

(2018) Katy Vandereyken et al.   Frontiers in Plant Science

Dissecting interplays between Vitis vinifera L. and grapevine virus B (GVB) under field conditions

(2018) Walter Chitarra et al.   MOLECULAR PLANT PATHOLOGY

Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay

(2018) Michael J. Roach et al.   PLoS Genetics

SALT OVERLY SENSITIVE 2 (SOS2) and Interacting Partners SOS3 and ABSCISIC ACID–INSENSITIVE 2 (ABI2) Promote Red-Light-Dependent Germination and Seedling Deetiolation in Arabidopsis

(2017) Santiago A. Trupkin et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Red blotch disease alters grape berry development and metabolism by interfering with the transcriptional and hormonal regulation of ripening

(2017) Barbara Blanco-Ulate et al.   JOURNAL OF EXPERIMENTAL BOTANY

Description of a Novel Monopartite Geminivirus and Its Defective Subviral Genome in Grapevine

(2017) Maher Al Rwahnih et al.   PHYTOPATHOLOGY

Autophagy functions as an antiviral mechanism against geminiviruses in plants

(2017) Yakupjan Haxim et al.   eLife

Grapevine Grafting: Scion Transcript Profiling and Defense-Related Metabolites Induced by Rootstocks

(2017) Walter Chitarra et al.   Frontiers in Plant Science

Potassium in the Grape (Vitis vinifera L.) Berry: Transport and Function

(2017) Suzy Y. Rogiers et al.   Frontiers in Plant Science

Abscisic Acid Is a Major Regulator of Grape Berry Ripening Onset: New Insights into ABA Signaling Network

(2017) Stefania Pilati et al.   Frontiers in Plant Science

Differential expression of miRNAs and associated gene targets in grapevine leafroll-associated virus 3-infected plants

(2016) Rachelle Bester et al.   ARCHIVES OF VIROLOGY

Identification and characterization of hemp WRKY transcription factors in response to abiotic stresses

(2016) P.-F. Xin et al.   BIOLOGIA PLANTARUM

Effects of Grapevine Leafroll associated Virus 3 (GLRaV-3) and duration of infection on fruit composition and wine chemical profile of Vitis vinifera L. cv. Sauvignon blanc

(2016) R. Montero et al.   FOOD CHEMISTRY

Functional Analysis of VvBG1 During Fruit Development and Ripening of Grape

(2016) Haifeng Jia et al.   JOURNAL OF PLANT GROWTH REGULATION

Characterization of an ABA-Induced and K+ Channel Gene FaKAT1 that Regulates Strawberry Fruit Ripening

(2016) Miaoyu Song et al.   JOURNAL OF PLANT GROWTH REGULATION

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Rootstocks: Diversity, Domestication, and Impacts on Shoot Phenotypes

(2016) Emily J. Warschefsky et al.   TRENDS IN PLANT SCIENCE

Cross-Talk in Viral Defense Signaling in Plants

(2016) Ju Y. Moon et al.   Frontiers in Microbiology

Association of Increased Grain Iron and Zinc Concentrations with Agro-morphological Traits of Biofortified Rice

(2016) Laura T. Moreno-Moyano et al.   Frontiers in Plant Science

The Role and Regulation of ABI5 (ABA-Insensitive 5) in Plant Development, Abiotic Stress Responses and Phytohormone Crosstalk

(2016) Anna Skubacz et al.   Frontiers in Plant Science

Responses of In vitro-Grown Plantlets (Vitis vinifera) to Grapevine leafroll-Associated Virus-3 and PEG-Induced Drought Stress

(2016) Zhen-Hua Cui et al.   Frontiers in Physiology

Network-Based Comparative Analysis of Arabidopsis Immune Responses to Golovinomyces orontii and Botrytis cinerea Infections

(2016) Zhenhong Jiang et al.   Scientific Reports

Reducing the Economic Impact of Grapevine Leafroll Disease in California: Identifying Optimal Disease Management Strategies

(2015) K. D. Ricketts et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Grapevine Leafroll Disease and Associated Viruses: A Unique Pathosystem

(2015) Rayapati A. Naidu et al.   Annual Review of Phytopathology

Identification and distribution of multiple virus infections in Grapevine leafroll diseased vineyards

(2015) Anna E. C. Jooste et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Root ABA Accumulation in Long-Term Water-Stressed Plants is Sustained by Hormone Transport from Aerial Organs

(2015) Matías Manzi et al.   PLANT AND CELL PHYSIOLOGY

SOS2-LIKE PROTEIN KINASE5, an SNF1-RELATED PROTEIN KINASE3-Type Protein Kinase, Is Important for Abscisic Acid Responses in Arabidopsis through Phosphorylation of ABSCISIC ACID-INSENSITIVE5

(2015) Xiaona Zhou et al.   PLANT PHYSIOLOGY

Ethylene Response Factors: A Key Regulatory Hub in Hormone and Stress Signaling

(2015) Maren Müller et al.   PLANT PHYSIOLOGY

Negative regulation of ABA signaling by WRKY33 is critical for Arabidopsis immunity towards Botrytis cinerea 2100

(2015) Shouan Liu et al.   eLife

Impact of hormonal crosstalk on plant resistance and fitness under multi-attacker conditions

(2015) Irene A. Vos et al.   Frontiers in Plant Science

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Discovery of Core Biotic Stress Responsive Genes in Arabidopsis by Weighted Gene Co-Expression Network Analysis

(2015) Katherine C. H. Amrine et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

(2014) Marten Boetzer et al.   BMC BIOINFORMATICS

Roles of plant hormones in the regulation of host-virus interactions

(2014) Mazen Alazem et al.   MOLECULAR PLANT PATHOLOGY

Grapevine Leafroll: A Complex Viral Disease Affecting a High-Value Fruit Crop

(2014) Rayapati Naidu et al.   PLANT DISEASE

Transcription and enzymatic analysis of beta-glucosidase VvBG1 in grape berry ripening

(2014) Jing-hua Sun et al.   PLANT GROWTH REGULATION

Effects of grapevine leafroll associated virus 3 infection on growth, leaf gas exchange, yield and basic fruit chemistry of Vitis vinifera L. cv. Cabernet Franc

(2014) Solomon T. Endeshaw et al.   SCIENTIA HORTICULTURAE

De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity

(2013) Luca Venturini et al.   BMC GENOMICS

Rootstock control of scion response to water stress in grapevine

(2013) Sara Tramontini et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Abiotic stress effects on grapevine (Vitis vinifera L.): Focus on abscisic acid-mediated consequences on secondary metabolism and berry quality

(2013) Alessandra Ferrandino et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders

(2013) C. Gaiteri et al.   GENES BRAIN AND BEHAVIOR

Arabidopsis CIPK26 interacts with KEG, components of the ABA signalling network and is degraded by the ubiquitin–proteasome system

(2013) Wendy J. Lyzenga et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Salt Overly Sensitive (SOS) Pathway: Established and Emerging Roles

(2013) Hongtao Ji et al.   Molecular Plant

The glutamate carboxypeptidase AMP1 mediates abscisic acid and abiotic stress responses inArabidopsis

(2013) Yiting Shi et al.   NEW PHYTOLOGIST

The High Polyphenol Content of Grapevine Cultivar Tannat Berries Is Conferred Primarily by Genes That Are Not Shared with the Reference Genome

(2013) C. Da Silva et al.   PLANT CELL

Plant Immune Responses Against Viruses: How Does a Virus Cause Disease?

(2013) Kranthi K. Mandadi et al.   PLANT CELL

Genes and Co-Expression Modules Common to Drought and Bacterial Stress Responses in Arabidopsis and Rice

(2013) Rafi Shaik et al.   PLoS One

Molecular characterization and impacts of a strain of Grapevine leafroll-associated virus 2 causing asymptomatic infection in a wine grape cultivar

(2013) Sudarsana Poojari et al.   Virology Journal

Tomato transcriptome and mutant analyses suggest a role for plant stress hormones in the interaction between fruit and Botrytis cinerea

(2013) Barbara Blanco-Ulate et al.   Frontiers in Plant Science

Impacts of leafroll-associated viruses (GLRaV-1 and -3) on the physiology of the Portuguese grapevine cultivar ‘Touriga Nacional’ growing under field conditions

(2012) J. Moutinho-Pereira et al.   ANNALS OF APPLIED BIOLOGY

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Abscisic Acid Deficiency Antagonizes High-Temperature Inhibition of Disease Resistance through Enhancing Nuclear Accumulation of Resistance Proteins SNC1 and RPS4 in Arabidopsis

(2012) H.-G. Mang et al.   PLANT CELL

The expression pattern of β-glucosidase genes (VvBGs) during grape berry maturation and dehydration stress

(2012) Guojun Zhang et al.   PLANT GROWTH REGULATION

A Meta-Analysis Reveals the Commonalities and Differences in Arabidopsis thaliana Response to Different Viral Pathogens

(2012) Guillermo Rodrigo et al.   PLoS One

Comparative analysis of microarray data in Arabidopsis transcriptome during compatible interactions with plant viruses

(2012) Olga A Postnikova et al.   Virology Journal

The p19.7 RNA silencing suppressor from Grapevine leafroll-associated virus 3 shows different levels of activity across phylogenetic groups

(2012) Paulo Gouveia et al.   VIRUS GENES

Economic Impact of Grapevine Leafroll Disease on Vitis vinifera cv. Cabernet franc in Finger Lakes Vineyards of New York

(2011) S. S. Atallah et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Vitis californicaandVitis californica×Vitis viniferaHybrids are Hosts forGrapevine leafroll-associated virus-2and-3andGrapevine virus AandB

(2011) V. A. Klaassen et al.   PLANT DISEASE

Compatible GLRaV-3 viral infections affect berry ripening decreasing sugar accumulation and anthocyanin biosynthesis in Vitis vinifera

(2011) Andrea Vega et al.   PLANT MOLECULAR BIOLOGY

The KEEP ON GOING Protein of Arabidopsis Recruits the ENHANCED DISEASE RESISTANCE1 Protein to Trans-Golgi Network/Early Endosome Vesicles

(2011) Y. Gu et al.   PLANT PHYSIOLOGY

Biological, molecular, and serological studies of a novel strain of grapevine leafroll-associated virus 2

(2011) Raed Alkowni et al.   VIRUS GENES

Modulation of flavonoid biosynthetic pathway genes and anthocyanins due to virus infection in grapevine (Vitis vinifera L.) leaves

(2010) Linga R Gutha et al.   BMC PLANT BIOLOGY

Viral Suppressors of RNA-Based Viral Immunity: Host Targets

(2010) Qingfa Wu et al.   Cell Host & Microbe

Quantitative analysis of major plant hormones in crude plant extracts by high-performance liquid chromatography–mass spectrometry

(2010) Xiangqing Pan et al.   Nature Protocols

Research on plant abiotic stress responses in the post-genome era: past, present and future

(2010) Takashi Hirayama et al.   PLANT JOURNAL

Low Oleic Acid-Derived Repression of Jasmonic Acid-Inducible Defense Responses Requires the WRKY50 and WRKY51 Proteins

(2010) Q.-M. Gao et al.   PLANT PHYSIOLOGY

Using a limited mapping strategy to identify major QTLs for resistance to grapevine powdery mildew (Erysiphe necator) and their use in marker-assisted breeding

(2010) S. Riaz et al.   THEORETICAL AND APPLIED GENETICS

Mealybugs and the spread of grapevine leafroll-associated virus 3 (GLRaV-3) in a New Zealand vineyard

(2009) J. G. Charles et al.   AUSTRALASIAN PLANT PATHOLOGY

The relationship between the expression of abscisic acid biosynthesis genes, accumulation of abscisic acid and the promotion ofVitis viniferaL. berry ripening by abscisic acid

(2009) S. WHEELER et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay

(2009) Laurent G Deluc et al.   BMC GENOMICS

Leafroll disease is spreading rapidly in a Napa Valley vineyard

(2009) Deborah A. Golino et al.   CALIFORNIA AGRICULTURE

Influence of grapevine leafroll associated viruses (GLRaV-2 and -3) on the fruit composition of Oregon Vitis vinifera L. cv. Pinot noir: Free amino acids, sugars, and organic acids

(2009) Jungmin Lee et al.   FOOD CHEMISTRY

Abscisic acid stimulated ripening and gene expression in berry skins of the Cabernet Sauvignon grape

(2009) Kazuya Koyama et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

VitisNet: “Omics” Integration through Grapevine Molecular Networks

(2009) Jérôme Grimplet et al.   PLoS One

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus

(2009) M. Al Rwahnih et al.   VIROLOGY

Influence of grapevine leafroll associated viruses (GLRaV-2 and -3) on the fruit composition of Oregon Vitis vinifera L. cv. Pinot noir: Phenolics

(2008) Jungmin Lee et al.   FOOD CHEMISTRY

Incidence and Distribution of Grapevine Leafroll-associated viruses in Tunisian Vineyards

(2008) Naima Mahfoudhi et al.   JOURNAL OF PHYTOPATHOLOGY

Comparison of low-density arrays, RT-PCR and real-time TaqMan® RT-PCR in detection of grapevine viruses

(2008) Fatima Osman et al.   JOURNAL OF VIROLOGICAL METHODS

β-Glucosidases as detonators of plant chemical defense

(2008) Anne Vinther Morant et al.   PHYTOCHEMISTRY

Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses

(2008) Yuanqing Jiang et al.   PLANT MOLECULAR BIOLOGY

Cross Talk in Defense Signaling

(2008) A. Koornneef et al.   PLANT PHYSIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY