A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution
出版年份 2019 全文链接
标题
A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution
作者
关键词
-
出版物
Scientific Reports
Volume 9, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-08-13
DOI
10.1038/s41598-019-47985-w
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Investigation of orthologous pathogen recognition gene-rich regions in solanaceous species
- (2017) A. Di Donato et al. GENOME
- New Insights on Eggplant/Tomato/Pepper Synteny and Identification of Eggplant and Pepper Orthologous QTL
- (2016) Riccardo Rinaldi et al. Frontiers in Plant Science
- The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny
- (2016) Davide Scaglione et al. Scientific Reports
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- ProCARs: Progressive Reconstruction of Ancestral Gene Orders
- (2015) Amandine Perrin et al. BMC GENOMICS
- Identification and distribution of the NBS-LRR gene family in the Cassava genome
- (2015) Roberto Lozano et al. BMC GENOMICS
- The miR156/SPL Module, a Regulatory Hub and Versatile Toolbox, Gears up Crops for Enhanced Agronomic Traits
- (2015) Hai Wang et al. Molecular Plant
- The bitter side of the nightshades: Genomics drives discovery in Solanaceae steroidal alkaloid metabolism
- (2015) P.D. Cárdenas et al. PHYTOCHEMISTRY
- Pentatricopeptide Repeat Proteins in Plants
- (2014) Alice Barkan et al. Annual Review of Plant Biology
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Plant carotenoids: genomics meets multi-gene engineering
- (2014) Giovanni Giuliano CURRENT OPINION IN PLANT BIOLOGY
- Draft Genome Sequence of Eggplant (Solanum melongena L.): the Representative Solanum Species Indigenous to the Old World
- (2014) Hideki Hirakawa et al. DNA RESEARCH
- A reference genome for common bean and genome-wide analysis of dual domestications
- (2014) Jeremy Schmutz et al. NATURE GENETICS
- Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
- (2014) Seungill Kim et al. NATURE GENETICS
- Genome sequence of the cultivated cotton Gossypium arboreum
- (2014) Fuguang Li et al. NATURE GENETICS
- A Non-Climacteric Fruit Gene CaMADS-RIN Regulates Fruit Ripening and Ethylene Biosynthesis in Climacteric Fruit
- (2014) Tingting Dong et al. PLoS One
- Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
- (2014) C. Qin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
- (2014) F. Denoeud et al. SCIENCE
- Fruit Development and Ripening
- (2013) Graham B. Seymour et al. Annual Review of Plant Biology
- A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree
- (2013) Tiina Särkinen et al. BMC EVOLUTIONARY BIOLOGY
- Gene clustering in plant specialized metabolism
- (2013) Hans-Wilhelm Nützmann et al. CURRENT OPINION IN BIOTECHNOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
- (2013) Koichiro Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
- (2013) M. S. Campbell et al. PLANT PHYSIOLOGY
- Wild Relatives of the Eggplant (Solanum melongena L.: Solanaceae): New Understanding of Species Names in a Complex Group
- (2013) Sandra Knapp et al. PLoS One
- The Population Structure and Diversity of Eggplant from Asia and the Mediterranean Basin
- (2013) Fabio Cericola et al. PLoS One
- Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes
- (2013) M. Itkin et al. SCIENCE
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
- (2012) Angélique D’Hont et al. NATURE
- Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly
- (2012) Ernest T Lam et al. NATURE BIOTECHNOLOGY
- The identification of cutin synthase: formation of the plant polyester cutin
- (2012) Trevor H Yeats et al. Nature Chemical Biology
- The draft genome of sweet orange (Citrus sinensis)
- (2012) Qiang Xu et al. NATURE GENETICS
- Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals importantSolanumR locus dynamics
- (2012) G. Andolfo et al. NEW PHYTOLOGIST
- The sunflower (Helianthus annuusL.) genome reflects a recent history of biased accumulation of transposable elements
- (2012) S. Evan Staton et al. PLANT JOURNAL
- A RAD Tag Derived Marker Based Eggplant Linkage Map and the Location of QTLs Determining Anthocyanin Pigmentation
- (2012) Lorenzo Barchi et al. PLoS One
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- Study of 'Redhaven' peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid and norisoprenoid volatile metabolism
- (2011) Federica Brandi et al. BMC PLANT BIOLOGY
- Genome sequence and analysis of the tuber crop potato
- (2011) Xun Xu et al. NATURE
- An efficient and rapid protocol for plant nuclear DNA preparation suitable for next generation sequencing methods
- (2010) G. Carrier et al. AMERICAN JOURNAL OF BOTANY
- TAPIR, a web server for the prediction of plant microRNA targets, including target mimics
- (2010) Eric Bonnet et al. BIOINFORMATICS
- MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data
- (2010) Anthony Mathelier et al. BIOINFORMATICS
- Chromosomal evolution in the plant family Solanaceae
- (2010) Feinan Wu et al. BMC GENOMICS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- miRBase: integrating microRNA annotation and deep-sequencing data
- (2010) A. Kozomara et al. NUCLEIC ACIDS RESEARCH
- agriGO: a GO analysis toolkit for the agricultural community
- (2010) Zhou Du et al. NUCLEIC ACIDS RESEARCH
- Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
- (2009) Michael Freeling Annual Review of Plant Biology
- Breakpoint graphs and ancestral genome reconstructions
- (2009) M. A. Alekseyev et al. GENOME RESEARCH
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1
- (2009) J. Vrebalov et al. PLANT CELL
- Amino Acid Substitutions in Homologs of the STAY-GREEN Protein Are Responsible for the green-flesh and chlorophyll retainer Mutations of Tomato and Pepper
- (2008) C. S. Barry et al. PLANT PHYSIOLOGY
- The Value of Nonmodel Genomes and an Example Using SynMap Within CoGe to Dissect the Hexaploidy that Predates the Rosids
- (2008) Eric Lyons et al. Tropical Plant Biology
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