Integrated Metabolomic and Transcriptomic Analyses Reveal Novel Insights of Anthocyanin Biosynthesis on Color Formation in Cassava Tuberous Roots

Integrated Metabolome and Transcriptome Analysis Unveils Novel Pathway Involved in the Formation of Yellow Peel in Cucumber

(2021) Chen Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Characterization of the Role of the Neoxanthin Synthase Gene BoaNXS in Carotenoid Biosynthesis in Chinese Kale

(2021) Yue Jian et al.   Genes

Insight into the pigmented anthocyanins and the major potential co-pigmented flavonoids in purple-coloured leaf teas

(2021) Jiang Shi et al.   FOOD CHEMISTRY

Large-scale RNAseq analysis reveals new insights into the key genes and regulatory networks of anthocyanin biosynthesis during development and stress in cassava

(2021) Lili Fu et al.   INDUSTRIAL CROPS AND PRODUCTS

Omics-Facilitated Crop Improvement for Climate Resilience and Superior Nutritive Value

(2021) Tinashe Zenda et al.   Frontiers in Plant Science

The Evolution of Flavonoid Biosynthesis: A Bryophyte Perspective

(2020) Kevin M. Davies et al.   Frontiers in Plant Science

Gene Expression and Metabolite Profiling of Thirteen Nigerian Cassava Landraces to Elucidate Starch and Carotenoid Composition

(2020) Priscilla Olayide et al.   Agronomy-Basel

Integrated Metabolomics and Transcriptomics Analyses Reveal the Molecular Mechanisms Underlying the Accumulation of Anthocyanins and Other Flavonoids in Cowpea Pod (Vigna unguiculata L.)

(2020) Yan Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Highly dynamic, coordinated, and stage-specific profiles revealed by multi-omics integrative analysis during cassava tuberous root development

(2020) Zehong Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

Combined Transcriptome and Metabolome analysis of Pitaya fruit unveiled the mechanisms underlying Peel and pulp color formation

(2020) Zhaoxi Zhou et al.   BMC GENOMICS

Impact of cultivar, growth temperature and developmental stage on phenolic compounds and ascorbic acid in purple and yellow potato tubers

(2020) Liz Gutiérrez-Quequezana et al.   FOOD CHEMISTRY

Dependence of Pepper Fruit Colour on Basic Pigments Ratio and Expression Pattern of Carotenoid and Anthocyanin Biosynthesis Genes

(2020) M. A. Filyushin et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

Metabolomic and Transcriptomic Analyses of Anthocyanin Biosynthesis Mechanisms in the Color Mutant Ziziphus jujuba cv. Tailihong

(2020) Qianqian Shi et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Integrative Analysis of the Coloring Mechanism of Red Longan Pericarp through Metabolome and Transcriptome Analyses

(2020) Debao Yi et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Extensive Post-Transcriptional Regulation Revealed by Transcriptomic and Proteomic Integrative Analysis in Cassava under Drought

(2019) Zehong Ding et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The MYB 5‐driven MBW complex recruits a WRKY factor to enhance the expression of targets involved in vacuolar hyper‐acidification and trafficking in grapevine

(2019) Alessandra Amato et al.   PLANT JOURNAL

Genomic analysis of the core components of ABA signaling reveals their possible role in abiotic stress response in cassava

(2019) Hui Zhao et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Transcriptome and metabolome profiling unveil the mechanisms of Ziziphus jujuba Mill. peel coloration

(2019) Qiong Zhang et al.   FOOD CHEMISTRY

Large-scale analysis of the cassava transcriptome reveals the impact of cold stress on alternative splicing

(2019) Shuxia Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Integrative analysis of metabolome and transcriptome reveals the mechanism of color formation in pepper fruit (Capsicum annuum L.)

(2019) Yuhua Liu et al.   FOOD CHEMISTRY

MYB20, MYB42, MYB43, and MYB85 Regulate Phenylalanine and Lignin Biosynthesis during Secondary Cell Wall Formation

(2019) Pan Geng et al.   PLANT PHYSIOLOGY

A comparative metabolomics study of flavonoids in sweet potato with different flesh colors ( Ipomoea batatas (L.) Lam)

(2018) Aimin Wang et al.   FOOD CHEMISTRY

Anthocyanins Accumulation and Molecular Analysis of Correlated Genes by Metabolome and Transcriptome in Green and Purple Asparaguses ( Asparagus Officinalis , L.)

(2018) Tingting Dong et al.   FOOD CHEMISTRY

‘Yellow is good for you’: Consumer perception and acceptability of fortified and biofortified cassava products

(2018) Aurélie Bechoff et al.   PLoS One

Recent understanding of starch biosynthesis in cassava for quality improvement: A review

(2018) Piengtawan Tappiban et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Provitamin A biofortification of cassava enhances shelf life but reduces dry matter content of storage roots due to altered carbon partitioning into starch

(2017) Getu Beyene et al.   PLANT BIOTECHNOLOGY JOURNAL

Natural variation in expression of genes associated with carotenoid biosynthesis and accumulation in cassava (Manihot esculenta Crantz) storage root

(2016) Luiz JCB Carvalho et al.   BMC PLANT BIOLOGY

Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation

(2016) Kyoungwon Cho et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Competition between anthocyanin and flavonol biosynthesis produces spatial pattern variation of floral pigments betweenMimulusspecies

(2016) Yao-Wu Yuan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome response of cassava leaves under natural shade

(2016) Zehong Ding et al.   Scientific Reports

Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation

(2015) Zhixin Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptome sequencing of a chimaera reveals coordinated expression of anthocyanin biosynthetic genes mediating yellow formation in herbaceous peony (Paeonia lactiflora Pall.)

(2014) Daqiu Zhao et al.   BMC GENOMICS

Molecular characterization of Cassava (Manihot esculenta Crantz) with yellow-orange roots for beta-carotene improvement

(2014) C.F. Ferreira et al.   Crop Breeding and Applied Biotechnology

Fruit skin color and the role of anthocyanin

(2013) Emrul Kayesh et al.   ACTA PHYSIOLOGIAE PLANTARUM

A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics

(2013) Wei Chen et al.   Molecular Plant

Provitamin A Accumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase Gene

(2010) Ralf Welsch et al.   PLANT CELL

An ordered EST catalogue and gene expression profiles of cassava (Manihot esculenta) at key growth stages

(2010) You-Zhi Li et al.   PLANT MOLECULAR BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS