Transcriptome sequencing of a chimaera reveals coordinated expression of anthocyanin biosynthetic genes mediating yellow formation in herbaceous peony (Paeonia lactiflora Pall.)

De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing

(2013) Chao Liang et al.   BMC GENOMICS

Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa

(2013) Chaobo Tong et al.   BMC GENOMICS

The RNA-seq approach to discriminate gene expression profiles in response to melatonin on cucumber lateral root formation

(2013) Na Zhang et al.   JOURNAL OF PINEAL RESEARCH

The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers

(2013) S. Cheng et al.   PLANT CELL

Whole transcriptome sequencing reveals genes involved in plastid/chloroplast division and development are regulated by the HP1/DDB1 at an early stage of tomato fruit development

(2013) Xiaofeng Tang et al.   PLANTA

Transcriptome Profiling of Radish (Raphanus sativus L.) Root and Identification of Genes Involved in Response to Lead (Pb) Stress with Next Generation Sequencing

(2013) Yan Wang et al.   PLoS One

The Flavonoid Pathway Regulates the Petal Colors of Cotton Flower

(2013) Jiafu Tan et al.   PLoS One

Transcriptome Analysis of Medicinal Plant Salvia miltiorrhiza and Identification of Genes Related to Tanshinone Biosynthesis

(2013) Lei Yang et al.   PLoS One

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

(2013) Ray Ming et al.   GENOME BIOLOGY

Transcriptome changes during fruit development and ripening of sweet orange (Citrus sinensis)

(2012) Keqin Yu et al.   BMC GENOMICS

Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq

(2012) Chao Feng et al.   BMC GENOMICS

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation

(2012) Lisa J Rowland et al.   BMC PLANT BIOLOGY

Flower color diversity revealed by differential expression of flavonoid biosynthetic genes and flavonoid accumulation in herbaceous peony (Paeonia lactiflora Pall.)

(2012) Daqiu Zhao et al.   MOLECULAR BIOLOGY REPORTS

Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology

(2012) Yixing Wang et al.   PLoS One

An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis

(2011) Qi Tang et al.   BMC GENOMICS

Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C3 and C4 species

(2011) Andrea Bräutigam et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development

(2011) R. Garg et al.   PLANT PHYSIOLOGY

Natural Variation in Petal Color in Lycoris longituba Revealed by Anthocyanin Components

(2011) Qiuling He et al.   PLoS One

Genetic engineering of flavonoid pigments to modify flower color in floricultural plants

(2010) Masahiro Nishihara et al.   BIOTECHNOLOGY LETTERS

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types

(2010) Shaogui Guo et al.   BMC GENOMICS

Comparative transcripts profiling reveals new insight into molecular processes regulating lycopene accumulation in a sweet orange (Citrus sinensis) red-flesh mutant

(2009) Qiang Xu et al.   BMC GENOMICS

Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses

(2009) M. J. Fullwood et al.   GENOME RESEARCH

Flavonoid Composition and Antioxidant Activity of Tree Peony (Paeonia SectionMoutan) Yellow Flowers

(2009) Chonghui Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Flavonoid characterization and antioxidant activity of hydroalcoholic extracts from Achillea ligustica All.

(2009) Carlo Ignazio Giovanni Tuberoso et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Cloning, characterization and localization of CHS gene from blood orange, Citrus sinensis (L.) Osbeck cv. Ruby

(2008) Xu Lu et al.   MOLECULAR BIOLOGY REPORTS

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS