Spatially varying selection between habitats drives physiological shifts and local adaptation in a broadcast spawning coral on a remote atoll in Western Australia

A framework for understanding gene expression plasticity and its influence on stress tolerance

(2021) Hanny E. Rivera et al.   MOLECULAR ECOLOGY

Locally adaptive inversions modulate genetic variation at different geographic scales in a seaweed fly

(2021) Claire Mérot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast and pervasive transcriptomic resilience and acclimation of extremely heat-tolerant coral holobionts from the northern Red Sea

(2021) Romain Savary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread variation in heat tolerance and symbiont load are associated with growth tradeoffs in the coral Acropora hyacinthus in Palau

(2021) Brendan Cornwell et al.   eLife

Standardized short‐term acute heat stress assays resolve historical differences in coral thermotolerance across microhabitat reef sites

(2020) Christian R. Voolstra et al.   GLOBAL CHANGE BIOLOGY

Meta‐analysis of the coral environmental stress response: Acropora corals show opposing responses depending on stress intensity

(2020) Groves Dixon et al.   MOLECULAR ECOLOGY

SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling

(2019) B. C. C. Hume et al.   Molecular Ecology Resources

ngsLD: evaluating linkage disequilibrium using genotype likelihoods

(2019) Emma A Fox et al.   BIOINFORMATICS

Transcriptomic resilience, symbiont shuffling, and vulnerability to recurrent bleaching in reef‐building corals

(2019) Luke Thomas et al.   MOLECULAR ECOLOGY

Thermal performance of scleractinian corals along a latitudinal gradient on the Great Barrier Reef

(2019) S. Jurriaans et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The active spread of adaptive variation for reef resilience

(2019) Kate M. Quigley et al.   Ecology and Evolution

Contrasting patterns of genetic connectivity in brooding and spawning corals across a remote atoll system in northwest Australia

(2019) Luke Thomas et al.   CORAL REEFS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Adaptation to reef habitats through selection on the coral animal and its associated microbiome

(2018) Madeleine J. H. van Oppen et al.   MOLECULAR ECOLOGY

A comprehensive genomic history of extinct and living elephants

(2018) Eleftheria Palkopoulou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Eco-Evolutionary Genomics of Chromosomal Inversions

(2018) Maren Wellenreuther et al.   TRENDS IN ECOLOGY & EVOLUTION

Potential and limits for rapid genetic adaptation to warming in a Great Barrier Reef coral

(2018) Mikhail V. Matz et al.   PLoS Genetics

The Roles of Introgression and Climate Change in the Rise to Dominance of Acropora Corals

(2018) Yafei Mao et al.   CURRENT BIOLOGY

Genomic and transcriptomic signals of thermal tolerance in heat-tolerant corals (Platygyra daedalea ) of the Arabian/Persian Gulf

(2018) Nathan L. Kirk et al.   MOLECULAR ECOLOGY

Restricted gene flow and local adaptation highlight the vulnerability of high-latitude reefs to rapid environmental change

(2017) Luke Thomas et al.   GLOBAL CHANGE BIOLOGY

Effect of low concentrations of Irgarol 1051 on RGB (R, red; G, green; B, blue) colour values of the hard-coral Acropora tenuis

(2017) Keita Hirayama et al.   MARINE POLLUTION BULLETIN

Genome architecture enables local adaptation of Atlantic cod despite high connectivity

(2017) Julia M. I. Barth et al.   MOLECULAR ECOLOGY

Gene flow and selection interact to promote adaptive divergence in regions of low recombination

(2017) Kieran Samuk et al.   MOLECULAR ECOLOGY

Coral reefs in the Anthropocene

(2017) Terry P. Hughes et al.   NATURE

The genomics of recovery from coral bleaching

(2017) Luke Thomas et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Transcriptome predictors of coral survival and growth in a highly variable environment

(2017) Rachael A. Bay et al.   Ecology and Evolution

Genomic models predict successful coral adaptation if future ocean warming rates are reduced

(2017) Rachael A. Bay et al.   Science Advances

New interventions are needed to save coral reefs

(2017) Ken Anthony et al.   Nature Ecology & Evolution

Genomic variation among populations of threatened coral: Acropora cervicornis

(2016) C. Drury et al.   BMC GENOMICS

Empty Niches after Extinctions Increase Population Sizes of Modern Corals

(2016) Carlos Prada et al.   CURRENT BIOLOGY

Larval connectivity across temperature gradients and its potential effect on heat tolerance in coral populations

(2016) Joan A. Kleypas et al.   GLOBAL CHANGE BIOLOGY

On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes

(2016) L. Bernatchez   JOURNAL OF FISH BIOLOGY

Genomics of local adaptation with gene flow

(2016) Anna Tigano et al.   MOLECULAR ECOLOGY

Biannual Spawning and Temporal Reproductive Isolation in Acropora Corals

(2016) James P. Gilmour et al.   PLoS One

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

(2015) Rachel M Wright et al.   BMC GENOMICS

Fine-scale environmental specialization of reef-building corals might be limiting reef recovery in the Florida Keys

(2015) Carly D. Kenkel et al.   ECOLOGY

Gene Networks in the Wild: Identifying Transcriptional Modules that Mediate Coral Resistance to Experimental Heat Stress

(2015) Noah H. Rose et al.   Genome Biology and Evolution

The role of transcriptome resilience in resistance of corals to bleaching

(2015) Francois O. Seneca et al.   MOLECULAR ECOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Building coral reef resilience through assisted evolution

(2015) Madeleine J. H. van Oppen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Limits to the thermal tolerance of corals adapted to a highly fluctuating, naturally extreme temperature environment

(2015) Verena Schoepf et al.   Scientific Reports

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Multilocus Adaptation Associated with Heat Resistance in Reef-Building Corals

(2014) Rachael A. Bay et al.   CURRENT BIOLOGY

Supergenes and their role in evolution

(2014) M J Thompson et al.   HEREDITY

ExploringSymbiodiniumdiversity and host specificity inAcroporacorals from geographical extremes of Western Australia with 454 amplicon pyrosequencing

(2014) L. Thomas et al.   MOLECULAR ECOLOGY

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

Mechanisms of reef coral resistance to future climate change

(2014) S. R. Palumbi et al.   SCIENCE

Historical thermal regimes define limits to coral acclimatization

(2013) Emily J. Howells et al.   ECOLOGY

Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides ) from different thermal environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Excess algal symbionts increase the susceptibility of reef corals to bleaching

(2012) Ross Cunning et al.   Nature Climate Change

Rarity and genetic diversity in Indo-PacificAcroporacorals

(2012) Zoe T. Richards et al.   Ecology and Evolution

The Genetic Consequences of Spatially Varying Selection in the Panmictic American Eel ( Anguilla rostrata )

(2011) Pierre-Alexandre Gagnaire et al.   GENETICS

Coral genomics and transcriptomics — Ushering in a new era in coral biology

(2011) David J. Miller et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

Many corals host thermally resistant symbionts in high-temperature habitat

(2010) T. A. Oliver et al.   CORAL REEFS

The susceptibility and resilience of corals to thermal stress: adaptation, acclimatization or both?

(2010) VIRGINIA M. WEIS   MOLECULAR ECOLOGY

Protein expression and genetic structure of the coralPorites lobatain an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity?

(2010) D. J. BARSHIS et al.   MOLECULAR ECOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Photographic assessment of coral chlorophyll contents: Implications for ecophysiological studies and coral monitoring

(2009) G. Winters et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

The effect of thermal history on the susceptibility of reef-building corals to thermal stress

(2008) R. Middlebrook et al.   JOURNAL OF EXPERIMENTAL BIOLOGY