Adaptation to reef habitats through selection on the coral animal and its associated microbiome

Shifting paradigms in restoration of the world's coral reefs

(2017) Madeleine J. H. van Oppen et al.   GLOBAL CHANGE BIOLOGY

Restricted gene flow and local adaptation highlight the vulnerability of high-latitude reefs to rapid environmental change

(2017) Luke Thomas et al.   GLOBAL CHANGE BIOLOGY

Microbial indicators as a diagnostic tool for assessing water quality and climate stress in coral reef ecosystems

(2017) Bettina Glasl et al.   MARINE BIOLOGY

Defining the Core Microbiome in Corals’ Microbial Soup

(2017) Alejandra Hernandez-Agreda et al.   TRENDS IN MICROBIOLOGY

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Stable mucus-associated bacterial communities in bleached and healthy corals of Porites lobata from the Arabian Seas

(2017) Ghaida Hadaidi et al.   Scientific Reports

Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience

(2017) Raquel S. Peixoto et al.   Frontiers in Microbiology

Deep reefs are not universal refuges: Reseeding potential varies among coral species

(2017) Pim Bongaerts et al.   Science Advances

The contribution of microbial biotechnology to mitigating coral reef degradation

(2017) Katarina Damjanovic et al.   Microbial Biotechnology

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

(2016) Matthew J. Neave et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Host adaptation and unexpected symbiont partners enable reef-building corals to tolerate extreme temperatures

(2016) Emily J. Howells et al.   GLOBAL CHANGE BIOLOGY

Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales

(2016) Matthew J Neave et al.   ISME Journal

Sex, Scavengers, and Chaperones: Transcriptome Secrets of DivergentSymbiodiniumThermal Tolerances

(2016) Rachel A. Levin et al.   MOLECULAR BIOLOGY AND EVOLUTION

The programstructuredoes not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

(2016) Sebastien J. Puechmaille   Molecular Ecology Resources

The Microbial Signature Provides Insight into the Mechanistic Basis of Coral Success across Reef Habitats

(2016) Alejandra Hernandez-Agreda et al.   mBio

Coral-Associated Actinobacteria: Diversity, Abundance, and Biotechnological Potentials

(2016) Huda M. Mahmoud et al.   Frontiers in Microbiology

Recovery from bleaching is mediated by threshold densities of background thermo-tolerant symbiont types in a reef-building coral

(2016) Line K. Bay et al.   Royal Society Open Science

Genetic markers for antioxidant capacity in a reef-building coral

(2016) Y. K. Jin et al.   Science Advances

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Archaeal and Bacterial Communities Associated with the Surface Mucus of Caribbean Corals Differ in Their Degree of Host Specificity and Community Turnover Over Reefs

(2016) Pedro R. Frade et al.   PLoS One

Host-associated coral reef microbes respond to the cumulative pressures of ocean warming and ocean acidification

(2016) N. S. Webster et al.   Scientific Reports

The stable microbiome of inter and sub-tidal anemone species under increasing pCO2

(2016) Erinn M. Muller et al.   Scientific Reports

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Coral reef metabolism and carbon chemistry dynamics of a coral reef flat

(2015) Rebecca Albright et al.   GEOPHYSICAL RESEARCH LETTERS

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix

(2015) Olga Pantos et al.   ISME Journal

Unexpected cryptic species diversity in the widespread coralSeriatopora hystrixmasks spatial-genetic patterns of connectivity

(2015) Patricia A. Warner et al.   MOLECULAR ECOLOGY

Coral-the world's most diverse symbiotic ecosystem

(2015) Linda L. Blackall et al.   MOLECULAR ECOLOGY

Building coral reef resilience through assisted evolution

(2015) Madeleine J. H. van Oppen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A bridge too far: cold and pathogen constraints to assisted migration of riparian forests

(2015) Kevin C. Grady et al.   RESTORATION ECOLOGY

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

Molecular processes of transgenerational acclimation to a warming ocean

(2015) Heather D. Veilleux et al.   Nature Climate Change

Deep down on a Caribbean reef: lower mesophotic depths harbor a specialized coral-endosymbiont community

(2015) Pim Bongaerts et al.   Scientific Reports

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

First-generation fitness consequences of interpopulational hybridisation in a Great Barrier Reef coral and its implications for assisted migration management

(2014) M. J. H. van Oppen et al.   CORAL REEFS

Multilocus Adaptation Associated with Heat Resistance in Reef-Building Corals

(2014) Rachael A. Bay et al.   CURRENT BIOLOGY

Gene expression profiles during short-term heat stress in the red sea coralStylophora pistillata

(2014) Keren Maor-Landaw et al.   GLOBAL CHANGE BIOLOGY

Natural volcanic CO2 seeps reveal future trajectories for host–microbial associations in corals and sponges

(2014) Kathleen M Morrow et al.   ISME Journal

AssessingSymbiodiniumdiversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA region

(2014) Chatchanit Arif et al.   MOLECULAR ECOLOGY

Compartment-specific transcriptomics in a reef-building coral exposed to elevated temperatures

(2014) Anderson B. Mayfield et al.   MOLECULAR ECOLOGY

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

(2013) Till Bayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sharing the slope: depth partitioning of agariciid corals and associated Symbiodinium across shallow and mesophotic habitats (2-60 m) on a Caribbean reef

(2013) Pim Bongaerts et al.   BMC EVOLUTIONARY BIOLOGY

Genotype – environment correlations in corals from the Great Barrier Reef

(2013) Petra Lundgren et al.   BMC GENETICS

KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome

(2013) Walter C Dunlap et al.   BMC GENOMICS

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

Historical thermal regimes define limits to coral acclimatization

(2013) Emily J. Howells et al.   ECOLOGY

Widespread evidence for incipient ecological speciation: a meta-analysis of isolation-by-ecology

(2013) Aaron B. A. Shafer et al.   ECOLOGY LETTERS

Genetic assignment of recruits reveals short- and long-distance larval dispersal inPocillopora damicornison the Great Barrier Reef

(2013) G. Torda et al.   MOLECULAR ECOLOGY

Revisiting the connectivity puzzle of the common coralPocillopora damicornis

(2013) G. Torda et al.   MOLECULAR ECOLOGY

A Rapid Genetic Assay for the Identification of the Most Common Pocillopora damicornis Genetic Lineages on the Great Barrier Reef

(2013) Gergely Torda et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate Change, Aboveground-Belowground Interactions, and Species' Range Shifts

(2012) Wim H. Van der Putten   Annual Review of Ecology Evolution and Systematics

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

(2012) Kathleen M. Morrow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D

(2012) Jason T Ladner et al.   BMC EVOLUTIONARY BIOLOGY

Assessing hidden species diversity in the coral Pocillopora damicornis from Eastern Australia

(2012) S. Schmidt-Roach et al.   CORAL REEFS

Impacts of ocean acidification in naturally variable coral reef flat ecosystems

(2012) Emily C. Shaw et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

(2012) S. K. Davy et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Nitric Oxide Production and Tolerance Differ Among Symbiodinium Types Exposed to Heat Stress

(2012) T. D. Hawkins et al.   PLANT AND CELL PHYSIOLOGY

Diel Variability in Seawater pH Relates to Calcification and Benthic Community Structure on Coral Reefs

(2012) Nichole N. Price et al.   PLoS One

Broadcast Spawning by Pocillopora Species on the Great Barrier Reef

(2012) Sebastian Schmidt-Roach et al.   PLoS One

A short-term in situ CO2 enrichment experiment on Heron Island (GBR)

(2012) David I. Kline et al.   Scientific Reports

Exposing local adaptation: synergistic stressors elicit population-specific lactate dehydrogenase-B (ldh-b) expression profiles in Australian barramundi, Lates calcarifer

(2011) Richard C. Edmunds et al.   AQUATIC SCIENCES

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats

(2011) Pim Bongaerts et al.   BMC EVOLUTIONARY BIOLOGY

Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis

(2011) Nikki Traylor-Knowles et al.   BMC GENOMICS

Diversity of Scleractinia and Octocorallia in the mesophotic zone of the Great Barrier Reef, Australia

(2011) T. C. L. Bridge et al.   CORAL REEFS

Do fluctuating temperature environments elevate coral thermal tolerance?

(2011) T. A. Oliver et al.   CORAL REEFS

Assessing the benefits and risks of translocations in changing environments: a genetic perspective

(2011) Andrew R. Weeks et al.   Evolutionary Applications

Diel coral reef acidification driven by porewater advection in permeable carbonate sands, Heron Island, Great Barrier Reef

(2011) Isaac R. Santos et al.   GEOPHYSICAL RESEARCH LETTERS

Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef

(2011) MADELEINE J. H. Van OPPEN et al.   MOLECULAR ECOLOGY

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses

(2011) ERIK C. FRANKLIN et al.   Molecular Ecology Resources

Present Limits to Heat-Adaptability in Corals and Population-Level Responses to Climate Extremes

(2011) Bernhard M. Riegl et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Protein expression and genetic structure of the coralPorites lobatain an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity?

(2010) D. J. BARSHIS et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Genetic Divergence across Habitats in the Widespread Coral Seriatopora hystrix and Its Associated Symbiodinium

(2010) Pim Bongaerts et al.   PLoS One

Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals

(2010) Linda Laikre et al.   TRENDS IN ECOLOGY & EVOLUTION

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Effects of temperature on gene expression in embryos of the coral Montastraea faveolata

(2009) Christian R Voolstra et al.   BMC GENOMICS

Phenotype–environment mismatches reduce connectivity in the sea

(2009) D. J. Marshall et al.   ECOLOGY LETTERS

Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef

(2009) Raechel A. Littman et al.   FEMS MICROBIOLOGY ECOLOGY

Variation in antioxidant gene expression in the scleractinian coral Acropora millepora under laboratory thermal stress

(2009) NBM Császár et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptomic responses to heat stress and bleaching in the elkhorn coral Acropora palmata

(2009) MK DeSalvo et al.   MARINE ECOLOGY PROGRESS SERIES

Cohesive molecular genetic data delineate species diversity in the dinoflagellate genusSymbiodinium

(2009) E. M. SAMPAYO et al.   MOLECULAR ECOLOGY

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Brevibacterium marinum sp. nov., isolated from seawater

(2008) S. D. Lee   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

(2008) V. M. Weis   JOURNAL OF EXPERIMENTAL BIOLOGY

Differential gene expression during thermal stress and bleaching in the Caribbean coralMontastraea faveolata

(2008) M. K. DESALVO et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

ECOLOGY: Assisted Colonization and Rapid Climate Change

(2008) O. Hoegh-Guldberg et al.   SCIENCE

Cell biology in model systems as the key to understanding corals

(2008) Virginia M. Weis et al.   TRENDS IN ECOLOGY & EVOLUTION