Genomic and transcriptomic signals of thermal tolerance in heat-tolerant corals (Platygyra daedalea ) of the Arabian/Persian Gulf

Characterization of a heat-activated retrotransposon in Vigna angularis

(2018) Yukari Masuta et al.   BREEDING SCIENCE

Shifting paradigms in restoration of the world's coral reefs

(2017) Madeleine J. H. van Oppen et al.   GLOBAL CHANGE BIOLOGY

Restricted gene flow and local adaptation highlight the vulnerability of high-latitude reefs to rapid environmental change

(2017) Luke Thomas et al.   GLOBAL CHANGE BIOLOGY

Impacts of temperature and lunar day on gene expression profiles during a monthly reproductive cycle in the brooding coral Pocillopora damicornis

(2017) Camerron M. Crowder et al.   MOLECULAR ECOLOGY

Genetic structure of coral-Symbiodinium symbioses on the world’s warmest reefs

(2017) Edward G. Smith et al.   PLoS One

Tidal heat pulses on a reef trigger a fine-tuned transcriptional response in corals to maintain homeostasis

(2017) Lupita J. Ruiz-Jones et al.   Science Advances

Host adaptation and unexpected symbiont partners enable reef-building corals to tolerate extreme temperatures

(2016) Emily J. Howells et al.   GLOBAL CHANGE BIOLOGY

Larval connectivity across temperature gradients and its potential effect on heat tolerance in coral populations

(2016) Joan A. Kleypas et al.   GLOBAL CHANGE BIOLOGY

The broad footprint of climate change from genes to biomes to people

(2016) Brett R. Scheffers et al.   SCIENCE

The sea urchinLytechinus variegatuslives close to the upper thermal limit for early development in a tropical lagoon

(2016) Rachel Collin et al.   Ecology and Evolution

Transcriptome of the Caribbean stony coral Porites astreoides from three developmental stages

(2016) Tamer A. Mansour et al.   GigaScience

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Gene Networks in the Wild: Identifying Transcriptional Modules that Mediate Coral Resistance to Experimental Heat Stress

(2015) Noah H. Rose et al.   Genome Biology and Evolution

Local adaptation constrains the distribution potential of heat-tolerant Symbiodinium from the Persian/Arabian Gulf

(2015) Cecilia D'Angelo et al.   ISME Journal

Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions

(2015) H. M. Putnam et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The role of transcriptome resilience in resistance of corals to bleaching

(2015) Francois O. Seneca et al.   MOLECULAR ECOLOGY

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Building coral reef resilience through assisted evolution

(2015) Madeleine J. H. van Oppen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contrasting futures for ocean and society from different anthropogenic CO2 emissions scenarios

(2015) J.- P. Gattuso et al.   SCIENCE

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

Limits to the thermal tolerance of corals adapted to a highly fluctuating, naturally extreme temperature environment

(2015) Verena Schoepf et al.   Scientific Reports

Symbiodinium thermophilum sp. nov., a thermotolerant symbiotic alga prevalent in corals of the world's hottest sea, the Persian/Arabian Gulf

(2015) B. C. C. Hume et al.   Scientific Reports

De Novo Assembly and Characterization of Four Anthozoan (Phylum Cnidaria) Transcriptomes

(2015) Sheila A. Kitchen et al.   G3-Genes Genomes Genetics

Whole transcriptome analysis reveals changes in expression of immune-related genes during and after bleaching in a reef-building coral

(2015) J. H. Pinzon et al.   Royal Society Open Science

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Transcriptomic Changes in Coral Holobionts Provide Insights into Physiological Challenges of Future Climate and Ocean Change

(2015) Paulina Kaniewska et al.   PLoS One

Early transcriptional changes in the reef-building coral Acropora aspera in response to thermal and nutrient stress

(2014) Nedeljka Rosic et al.   BMC GENOMICS

Multilocus Adaptation Associated with Heat Resistance in Reef-Building Corals

(2014) Rachael A. Bay et al.   CURRENT BIOLOGY

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

(2014) Rachel N. Silverstein et al.   GLOBAL CHANGE BIOLOGY

Mechanisms of reef coral resistance to future climate change

(2014) S. R. Palumbi et al.   SCIENCE

Coral spawning in the Gulf of Oman and relationship to latitudinal variation in spawning season in the northwest Indian Ocean

(2014) E. J. Howells et al.   Scientific Reports

How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation

(2014) Vladimir V. Cavrak et al.   PLoS Genetics

Genotype – environment correlations in corals from the Great Barrier Reef

(2013) Petra Lundgren et al.   BMC GENETICS

Predicting evolutionary responses to climate change in the sea

(2013) Philip L. Munday et al.   ECOLOGY LETTERS

Evolution of the ONSEN retrotransposon family activated upon heat stress in Brassicaceae

(2013) Hidetaka Ito et al.   GENE

Incorporating adaptive responses into future projections of coral bleaching

(2013) Cheryl A. Logan et al.   GLOBAL CHANGE BIOLOGY

Patterns of coral settlement in an extreme environment: the southern Persian Gulf (Dubai, United Arab Emirates)

(2013) AG Bauman et al.   MARINE ECOLOGY PROGRESS SERIES

A complex life cycle in a warming planet: gene expression in thermally stressed sponges

(2013) N. Webster et al.   MOLECULAR ECOLOGY

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides ) from different reef environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Variation in the transcriptional response of threatened coral larvae to elevated temperatures

(2013) Nicholas R. Polato et al.   MOLECULAR ECOLOGY

Juveniles Are More Resistant to Warming than Adults in 4 Species of Antarctic Marine Invertebrates

(2013) Lloyd S. Peck et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate change and marine life

(2012) A. J. Richardson et al.   Biology Letters

Differential gene expression in juvenile polyps of the coral Acropora tenuis exposed to thermal and chemical stresses

(2012) Ikuko Yuyama et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Thermal tolerances of reef corals in the Gulf: A review of the potential for increasing coral survival and adaptation to climate change through assisted translocation

(2012) Steve L. Coles et al.   MARINE POLLUTION BULLETIN

2b-RAD: a simple and flexible method for genome-wide genotyping

(2012) Shi Wang et al.   NATURE METHODS

Coral Thermal Tolerance: Tuning Gene Expression to Resist Thermal Stress

(2012) Anthony J. Bellantuono et al.   PLoS One

Climate-change refugia in the sheltered bays of Palau: analogs of future reefs

(2012) Robert van Woesik et al.   Ecology and Evolution

Climate Change Impacts on Marine Ecosystems

(2011) Scott C. Doney et al.   Annual Review of Marine Science

Do fluctuating temperature environments elevate coral thermal tolerance?

(2011) T. A. Oliver et al.   CORAL REEFS

Toward a conceptual synthesis for climate change responses

(2011) Mary I. O'Connor et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Long-term impacts of coral bleaching events on the world’s warmest reefs

(2011) John Burt et al.   MARINE ENVIRONMENTAL RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Present Limits to Heat-Adaptability in Corals and Population-Level Responses to Climate Extremes

(2011) Bernhard M. Riegl et al.   PLoS One

Resistance to thermal stress in corals without changes in symbiont composition

(2011) A. J. Bellantuono et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effect of a fluctuating thermal regime on adult and larval reef corals

(2010) Hollie M. Putnam et al.   INVERTEBRATE BIOLOGY

Development and heat stress-induced transcriptomic changes during embryogenesis of the scleractinian coral Acropora palmata

(2010) Kevin J. Portune et al.   Marine Genomics

Gene function analysis in complex data sets using ErmineJ

(2010) Jesse Gillis et al.   Nature Protocols

A practical guide to understanding Kaplan-Meier curves

(2010) Jason T. Rich et al.   OTOLARYNGOLOGY-HEAD AND NECK SURGERY

Estimating the Potential for Adaptation of Corals to Climate Warming

(2010) Nikolaus B. M. Császár et al.   PLoS One

The Impact of Climate Change on the World's Marine Ecosystems

(2010) O. Hoegh-Guldberg et al.   SCIENCE

Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals

(2009) Andrew H. Baird et al.   Annual Review of Ecology Evolution and Systematics

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

Effects of temperature on gene expression in embryos of the coral Montastraea faveolata

(2009) Christian R Voolstra et al.   BMC GENOMICS

An ecologist’s guide to the animal model

(2009) Alastair J. Wilson et al.   JOURNAL OF ANIMAL ECOLOGY

Role of ERO1-α–mediated stimulation of inositol 1,4,5-triphosphate receptor activity in endoplasmic reticulum stress–induced apoptosis

(2009) Gang Li et al.   JOURNAL OF CELL BIOLOGY

Genetic variation in responses to a settlement cue and elevated temperature in the reef-building coral Acropora millepora

(2009) E Meyer et al.   MARINE ECOLOGY PROGRESS SERIES

The coral reef crisis: The critical importance of

(2009) J.E.N. Veron et al.   MARINE POLLUTION BULLETIN

Corals escape bleaching in regions that recently and historically experienced frequent thermal stress

(2009) D. M. Thompson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

SHRiMP: Accurate Mapping of Short Color-space Reads

(2009) Stephen M. Rumble et al.   PLoS Computational Biology

Survival dynamics of scleractinian coral larvae and implications for dispersal

(2008) E. M. Graham et al.   CORAL REEFS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Population structure is not a simple function of reproductive mode and larval type: insights from tropical corals

(2008) Karen J. Miller et al.   JOURNAL OF ANIMAL ECOLOGY

The effect of thermal history on the susceptibility of reef-building corals to thermal stress

(2008) R. Middlebrook et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Recovery of corals a decade after a bleaching event in Dubai, United Arab Emirates

(2008) J. Burt et al.   MARINE BIOLOGY

Major bleaching events can lead to increased thermal tolerance in corals

(2008) J. A. Maynard et al.   MARINE BIOLOGY

Differential gene expression during thermal stress and bleaching in the Caribbean coralMontastraea faveolata

(2008) M. K. DESALVO et al.   MOLECULAR ECOLOGY

Heritability in the genomics era — concepts and misconceptions

(2008) Peter M. Visscher et al.   NATURE REVIEWS GENETICS

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

One-Third of Reef-Building Corals Face Elevated Extinction Risk from Climate Change and Local Impacts

(2008) K. E. Carpenter et al.   SCIENCE

ECOLOGY: Assisted Colonization and Rapid Climate Change

(2008) O. Hoegh-Guldberg et al.   SCIENCE

Coral bleaching: the role of the host

(2008) Andrew H. Baird et al.   TRENDS IN ECOLOGY & EVOLUTION