Acidic amelioration of soil amendments improves soil health by impacting rhizosphere microbial assemblies

Priming, stabilization and temperature sensitivity of native SOC is controlled by microbial responses and physicochemical properties of biochar

(2021) Guanhong Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial deterioration and restoration in greenhouse-based intensive vegetable production systems

(2021) Weishou Shen et al.   PLANT AND SOIL

Decomposing cover crops modify root-associated microbiome composition and disease tolerance of cash crop seedlings

(2021) Xiaojiao Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

From Microbial Dynamics to Functionality in the Rhizosphere: A Systematic Review of the Opportunities With Synthetic Microbial Communities

(2021) Olga Marín et al.   Frontiers in Plant Science

Sphingomonas: from diversity and genomics to functional role in environmental remediation and plant growth

(2020) Sajjad Asaf et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Modulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion

(2020) Alberto Pascale et al.   Frontiers in Plant Science

Rhizosphere microbiome functional diversity and pathogen invasion resistance build up during plant development

(2020) Jie Hu et al.   ENVIRONMENTAL MICROBIOLOGY

Dramatic loss of inorganic carbon by nitrogen‐induced soil acidification in Chinese croplands

(2020) Sajjad Raza et al.   GLOBAL CHANGE BIOLOGY

Persistent organic fertilization reinforces soil-borne disease suppressiveness of rhizosphere bacterial community

(2020) Dele Chen et al.   PLANT AND SOIL

Farmyard manure applications stimulate soil carbon and nitrogen cycling by boosting microbial biomass rather than changing its community composition

(2020) Qingxu Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Linking plant litter microbial diversity to microhabitat conditions, environmental gradients and litter mass loss: Insights from a European study using standard litter bags

(2020) Silvia Pioli et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fertilization changes soil microbiome functioning, especially phagotrophic protists

(2020) Zhi-Bo Zhao et al.   SOIL BIOLOGY & BIOCHEMISTRY

The proportion of soil-borne pathogens increases with warming at the global scale

(2020) Manuel Delgado-Baquerizo et al.   Nature Climate Change

Salicylic Acid Biosynthesis in Plants

(2020) Hannes Lefevere et al.   Frontiers in Plant Science

Predicting disease occurrence with high accuracy based on soil macroecological patterns of Fusarium wilt

(2020) Jun Yuan et al.   ISME Journal

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Soil acidification modifies soil depth-microbiome relationships in a no-till wheat cropping system

(2020) Daniel C. Schlatter et al.   SOIL BIOLOGY & BIOCHEMISTRY

Disruption of Firmicutes and Actinobacteria abundance in tomato rhizosphere causes the incidence of bacterial wilt disease

(2020) Sang-Moo Lee et al.   ISME Journal

The Soil-Borne Identity and Microbiome-Assisted Agriculture: Looking Back to the Future

(2020) Peter A.H.M. Bakker et al.   Molecular Plant

Root exudates drive soil‐microbe‐nutrient feedbacks in response to plant growth

(2020) Mengli Zhao et al.   PLANT CELL AND ENVIRONMENT

Coumarin Communication Along the Microbiome–Root–Shoot Axis

(2020) Max J.J. Stassen et al.   TRENDS IN PLANT SCIENCE

Bio-organic fertilizers stimulate indigenous soil Pseudomonas populations to enhance plant disease suppression

(2020) Chengyuan Tao et al.   Microbiome

Evidence for the plant recruitment of beneficial microbes to suppress soil‐borne pathogens

(2020) Hongwei Liu et al.   NEW PHYTOLOGIST

How microbes can, and cannot, be used to assess soil health

(2020) Noah Fierer et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters

(2019) Elena Cerro‐Gálvez et al.   ENVIRONMENTAL MICROBIOLOGY

Highly connected taxa located in the microbial network are prevalent in the rhizosphere soil of healthy plant

(2019) Xinqi Huang et al.   BIOLOGY AND FERTILITY OF SOILS

Soil microbiome: a key player for conservation of soil health under changing climate

(2019) Anamika Dubey et al.   BIODIVERSITY AND CONSERVATION

Systems Biology of Plant-Microbiome Interactions

(2019) Patricia A. Rodriguez et al.   Molecular Plant

High aluminum stress drives different rhizosphere soil enzyme activities and bacterial community structure between aluminum-tolerant and aluminum-sensitive soybean genotypes

(2019) Tengxiang Lian et al.   PLANT AND SOIL

Vermicompost can suppress Fusarium oxysporum f. sp. lycopersici via generation of beneficial bacteria in a long-term tomato monoculture soil

(2019) Fengyan Zhao et al.   PLANT AND SOIL

Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

(2019) Mathias J. E. E. E. Voges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Long-term manure application increases soil organic matter and aggregation, and alters microbial community structure and keystone taxa

(2019) Yongxin Lin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Acidobacteria Subgroups and Their Metabolic Potential for Carbon Degradation in Sugarcane Soil Amended With Vinasse and Nitrogen Fertilizers

(2019) Miriam Gonçalves de Chaves et al.   Frontiers in Microbiology

Interdomain ecological networks between plants and microbes

(2019) Kai Feng et al.   Molecular Ecology Resources

Environmental filtering: A case of bacterial community assembly in soil

(2019) Yan Yan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat

(2019) Lydie Kerdraon et al.   Microbiome

Stable Microbial Community and Specific Beneficial Taxa Associated

(2019) Lin Fu et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Effect of gypsum rates and lime with different reactivity on soil acidity and crop grain yields in a subtropical Oxisol under no-tillage

(2019) Sandra Mara Vieira Fontoura et al.   SOIL & TILLAGE RESEARCH

pH and exchangeable aluminum are major regulators of microbial energy flow and carbon use efficiency in soil microbial communities

(2019) Davey L. Jones et al.   SOIL BIOLOGY & BIOCHEMISTRY

Peanut plant growth was altered by monocropping-associated microbial enrichment of rhizosphere microbiome

(2019) Xiaogang Li et al.   PLANT AND SOIL

Mechanisms by which organic fertilizer and effective microbes mitigate peanut continuous cropping yield constraints in a red soil of south China

(2018) Wei Chen et al.   APPLIED SOIL ECOLOGY

Long-term nitrogen fertilization decreases bacterial diversity and favors the growth of Actinobacteria and Proteobacteria in agro-ecosystems across the globe

(2018) Zhongmin Dai et al.   GLOBAL CHANGE BIOLOGY

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Involvement of Burkholderiaceae and sulfurous volatiles in disease-suppressive soils

(2018) Víctor J. Carrión et al.   ISME Journal

Effectiveness of crop straws, and swine manure in ameliorating acidic red soils: a laboratory study

(2018) Zejiang Cai et al.   JOURNAL OF SOILS AND SEDIMENTS

Soil labile organic carbon fractions and soil organic carbon stocks as affected by long-term organic and mineral fertilization regimes in the North China Plain

(2018) Juan Li et al.   SOIL & TILLAGE RESEARCH

Soil quality – A critical review

(2018) Else K. Bünemann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Design of synthetic bacterial communities for predictable plant phenotypes

(2018) Sur Herrera Paredes et al.   PLOS BIOLOGY

Microbial Flora Associated with the Halophyte–Salsola imbricate and Its Biotechnical Potential

(2018) Fehmida Bibi et al.   Frontiers in Microbiology

Integrated transcriptomic and metabolomic analyses of a wax deficient citrus mutant exhibiting jasmonic acid-mediated defense against fungal pathogens

(2018) Yizhong He et al.   Horticulture Research

Soil organic carbon dynamics in wheat - Green gram crop rotation amended with vermicompost and biochar in combination with inorganic fertilizers: A comparative study

(2018) Banashree Sarma et al.   JOURNAL OF CLEANER PRODUCTION

Facilitation promotes invasions in plant‐associated microbial communities

(2018) Mei Li et al.   ECOLOGY LETTERS

Legacy of land use history determines reprogramming of plant physiology by soil microbiome

(2018) Xiaogang Li et al.   ISME Journal

Ethylene signaling regulates natural variation in the abundance of antifungal acetylated diferuloylsucroses and Fusarium graminearum resistance in maize seedling roots

(2018) Shaoqun Zhou et al.   NEW PHYTOLOGIST

Suppression of banana Panama disease induced by soil microbiome reconstruction through an integrated agricultural strategy

(2018) Zongzhuan Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Alleviation of aluminum phytotoxicity by canola straw biochars varied with their cultivating soils through an investigation of wheat seedling root elongation

(2018) Ying Dong et al.   CHEMOSPHERE

Mechanisms for Increasing the pH Buffering Capacity of an Acidic Ultisol by Crop Residue-Derived Biochars

(2017) Ren-yong Shi et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Salicylic acid-dependent immunity contributes to resistance against Rhizoctonia solani , a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon

(2017) Yusuke Kouzai et al.   NEW PHYTOLOGIST

Physiological mechanisms behind endophytic fungus Phomopsis liquidambari-mediated symbiosis enhancement of peanut in a monocropping system

(2017) Wei Zhang et al.   PLANT AND SOIL

Role of fusaric acid in the development of ‘ Fusarium wilt’ symptoms in tomato: Physiological, biochemical and proteomic perspectives

(2017) Vivek Kumar Singh et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Keystone microbial taxa regulate the invasion of a fungal pathogen in agro-ecosystems

(2017) P. Trivedi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium wilt disease

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Balanced Fertilization Decreases Environmental Filtering on Soil Bacterial Community Assemblage in North China

(2017) Youzhi Feng et al.   Frontiers in Microbiology

ROS generation, oxidative burst and dynamic expression profiles of ROS-scavenging enzymes of superoxide dismutase (SOD), catalase (CAT) and ascorbate peroxidase (APX) in response to Erwinia amylovora in pear (Pyrus communis L)

(2016) Saeidreza Azarabadi et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Increased anthocyanin and flavonoids in mango fruit peel are associated with cold and pathogen resistance

(2016) Velu Sivankalyani et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Non-random species loss in bacterial communities reduces antifungal volatile production

(2015) W. H. Gera Hol et al.   ECOLOGY

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

An extended single-index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms

(2015) Hooman Derakhshani et al.   JOURNAL OF BASIC MICROBIOLOGY

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes

(2015) Lilia C. Carvalhais et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Sensitivity of Labile Soil Organic Carbon Pools to Long-Term Fertilizer, Straw and Manure Management in Rice-Wheat System

(2015) Dinesh K. BENBI et al.   PEDOSPHERE

Antifungal Rhizosphere Bacteria Can increase as Response to the Presence of Saprotrophic Fungi

(2015) Wietse de Boer et al.   PLoS One

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health

(2015) Zhong Wei et al.   Nature Communications

Natural rice rhizospheric microbes suppress rice blast infections

(2014) Carla Spence et al.   BMC PLANT BIOLOGY

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

An important role of the pepper phenylalanine ammonia-lyase gene (PAL1) in salicylic acid-dependent signalling of the defence response to microbial pathogens

(2014) Dae Sung Kim et al.   JOURNAL OF EXPERIMENTAL BOTANY

Bacterial endophyte Sphingomonas sp. LK11 produces gibberellins and IAA and promotes tomato plant growth

(2014) Abdul Latif Khan et al.   JOURNAL OF MICROBIOLOGY

Volatile-mediated interactions between phylogenetically different soil bacteria

(2014) Paolina Garbeva et al.   Frontiers in Microbiology

The Composition of Root Exudates from Two Different Resistant Peanut Cultivars and Their Effects on the Growth of Soil-Borne Pathogen

(2013) Xiao-gang Li et al.   International Journal of Biological Sciences

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Forward GeneticIn PlantaScreen for Identification of Plant-Protective Traits of Sphingomonas sp. Strain Fr1 against Pseudomonas syringae DC3000

(2012) Christine Vogel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quorum Sensing of Bacteria and Trans-Kingdom Interactions of N-Acyl Homoserine Lactones with Eukaryotes

(2012) Anton Hartmann et al.   JOURNAL OF CHEMICAL ECOLOGY

Long-term effects of organic amendments on the recovery of plant and soil microbial communities following disturbance in the Canadian boreal forest

(2012) Aria S. Hahn et al.   PLANT AND SOIL

Microbial diversity determines the invasion of soil by a bacterial pathogen

(2012) J. D. van Elsas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Rhizosphere microbial communities and organic acids secreted by aluminum-tolerant and aluminum-sensitive soybean in acid soil

(2011) Tongyi Yang et al.   BIOLOGY AND FERTILITY OF SOILS

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits

(2011) Jennifer A. Lau et al.   NEW PHYTOLOGIST

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Significant Acidification in Major Chinese Croplands

(2010) J. H. Guo et al.   SCIENCE

Biocontrole de doenças de parte aérea do tomateiro por Nocardioides thermolilacinus

(2009) Renato Carrer Filho et al.   Tropical Plant Pathology

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL