Distinct soil microbial diversity under long-term organic and conventional farming

Coprophilous fungi: antibiotic discovery and functions in an underexplored arena of microbial defensive mutualism

(2013) Gerald F Bills et al.   CURRENT OPINION IN MICROBIOLOGY

Resistance and resilience of the forest soil microbiome to logging-associated compaction

(2013) Martin Hartmann et al.   ISME Journal

Comparison of commonly used primer sets for evaluating arbuscular mycorrhizal fungal communities: Is there a universal solution?

(2013) Petr Kohout et al.   SOIL BIOLOGY & BIOCHEMISTRY

Global food security, biodiversity conservation and the future of agricultural intensification

(2012) Teja Tscharntke et al.   BIOLOGICAL CONSERVATION

Manipulating the soil microbiome to increase soil health and plant fertility

(2012) Jacqueline M. Chaparro et al.   BIOLOGY AND FERTILITY OF SOILS

Long-term effects of soil nutrient deficiency on arbuscular mycorrhizal communities

(2012) Pedro M. Antunes et al.   FUNCTIONAL ECOLOGY

Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests

(2012) Martin Hartmann et al.   ISME Journal

Changes in Bacterial Community Structure of Agricultural Land Due to Long-Term Organic and Chemical Amendments

(2012) Vasvi Chaudhry et al.   MICROBIAL ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Pyrosequencing Reveals the Influence of Organic and Conventional Farming Systems on Bacterial Communities

(2012) Ru Li et al.   PLoS One

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

(2011) Xiaolin Hao et al.   BIOINFORMATICS

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Environmental Impact of Different Agricultural Management Practices: Conventional vs. Organic Agriculture

(2011) Tiziano Gomiero et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Identification of Thermophilic Bacterial Strains Producing Thermotolerant Hydrolytic Enzymes from Manure Compost

(2011) David M. Charbonneau et al.   INDIAN JOURNAL OF MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Soil biota community structure and abundance under agricultural intensification and extensification

(2010) Maria B. Postma-Blaauw et al.   ECOLOGY

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

(2010) R. Henrik Nilsson et al.   Fungal Ecology

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

V-Xtractor: An open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

(2010) Martin Hartmann et al.   JOURNAL OF MICROBIOLOGICAL METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

DNA barcoding of arbuscular mycorrhizal fungi

(2010) Herbert Stockinger et al.   NEW PHYTOLOGIST

Improving indicator species analysis by combining groups of sites

(2010) Miquel De Cáceres et al.   OIKOS

Pyrosequencing Assessment of Soil Microbial Communities in Organic and Conventional Potato Farms

(2010) Akifumi Sugiyama et al.   PLANT DISEASE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

qvality: non-parametric estimation of q-values and posterior error probabilities

(2009) Lukas Käll et al.   BIOINFORMATICS

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Fungal community structure in soils of conventional and organic farming systems

(2009) S. Schneider et al.   Fungal Ecology

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

A new species of Phoma causes ascochyta blight symptoms on field peas (Pisum sativum) in South Australia

(2009) J.A. Davidson et al.   MYCOLOGIA

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China

(2008) Yuan Ge et al.   JOURNAL OF SOILS AND SEDIMENTS

Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems

(2008) Kamlesh Jangid et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term organic farming fosters below and aboveground biota: Implications for soil quality, biological control and productivity

(2008) Klaus Birkhofer et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY