High expression of the MADS-box gene VRT2 increases the number of rudimentary basal spikelets in wheat

Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

(2021) Xiaosa Xu et al.   DEVELOPMENTAL CELL

Transcriptional landscapes of floral meristems in barley

(2021) J. Thiel et al.   Science Advances

Ectopic expression of VRT-A2 underlies the origin of Triticum polonicum and Triticum petropavlovskyi with long outer glumes and grains

(2021) Jing Liu et al.   Molecular Plant

Rice SEPALLATA genes OsMADS5 and OsMADS34 cooperate to limit inflorescence branching by repressing the TERMINAL FLOWER1 ‐like gene RCN4

(2021) Wanwan Zhu et al.   NEW PHYTOLOGIST

Interactions between SQUAMOSA and SHORT VEGETATIVE PHASE MADS-box proteins regulate meristem transitions during wheat spike development

(2021) Kun Li et al.   PLANT CELL

The promise of single-cell genomics in plants

(2020) José L McFaline-Figueroa et al.   CURRENT OPINION IN PLANT BIOLOGY

An acyl-CoA N-acyltransferase regulates meristem phase change and plant architecture in barley

(2020) Agatha Walla et al.   PLANT PHYSIOLOGY

Developmental pathways for shaping spike inflorescence architecture in barley and wheat

(2019) Ravi Koppolu et al.   Journal of Integrative Plant Biology

CENTRORADIALIS interacts with FLOWERING LOCUS T-like genes to control floret development and grain number

(2019) XIaojing Bi et al.   PLANT PHYSIOLOGY

Wheat VRN1, FUL2 and FUL3 play critical and redundant roles in spikelet development and spike determinacy

(2019) Chengxia Li et al.   DEVELOPMENT

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Reconstructing the Transcriptional Ontogeny of Maize and Sorghum Supports an Inverse Hourglass Model of Inflorescence Development

(2019) Samuel Leiboff et al.   CURRENT BIOLOGY

Genome‐wide analysis of MIKC ‐type MADS ‐box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization

(2019) Susanne Schilling et al.   NEW PHYTOLOGIST

Spatially resolved transcriptomics reveals plant host responses to pathogens

(2019) Michael Giolai et al.   Plant Methods

Single-Cell Transcriptomics: A High-Resolution Avenue for Plant Functional Genomics

(2019) Charlotte Rich-Griffin et al.   TRENDS IN PLANT SCIENCE

Grass inflorescence architecture and meristem determinacy

(2018) Peter Bommert et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Shifting the limits in wheat research and breeding using a fully annotated reference genome

(2018) et al.   SCIENCE

The transcriptional landscape of polyploid wheat

(2018) R. H. Ramírez-González et al.   SCIENCE

A Genome-wide View of Transcriptome Dynamics During Early Spike Development in Bread Wheat

(2018) Yongpeng Li et al.   Scientific Reports

Grass inflorescence architecture and evolution: the origin of novel signaling centers

(2017) Clinton J. Whipple   NEW PHYTOLOGIST

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics

(2017) Michiel Van Bel et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes

(2017) Nan Feng et al.   PLANT PHYSIOLOGY

Transcriptome association identifies regulators of wheat spike architecture

(2017) Yuange Wang et al.   PLANT PHYSIOLOGY

Loss of LOFSEP Transcription Factor Function Converts Spikelet to Leaf-Like Structures in Rice

(2017) Di Wu et al.   PLANT PHYSIOLOGY

VRS2 regulates hormone-mediated inflorescence patterning in barley

(2016) Helmy M Youssef et al.   NATURE GENETICS

Gene expression profiling of reproductive meristem types in early rice inflorescences by laser microdissection

(2016) Thomas W. R. Harrop et al.   PLANT JOURNAL

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

(2016) Nicholas J. Schurch et al.   RNA

Regulatory Role of OsMADS34 in the Determination of Glumes Fate, Grain Yield, and Quality in Rice

(2016) Deyong Ren et al.   Frontiers in Plant Science

The Genetic Basis of Composite Spike Form in Barley and 'Miracle-Wheat'

(2015) N. Poursarebani et al.   GENETICS

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

(2015) Iain C Macaulay et al.   NATURE METHODS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Regulatory modules controlling maize inflorescence architecture

(2013) A. L. Eveland et al.   GENOME RESEARCH

Early inflorescence development in the grasses (Poaceae)

(2013) Elizabeth A. Kellogg et al.   Frontiers in Plant Science

Analysis of the barley bract suppression gene Trd1

(2012) Kelly Houston et al.   THEORETICAL AND APPLIED GENETICS

A Conserved Mechanism of Bract Suppression in the Grass Family

(2010) C. J. Whipple et al.   PLANT CELL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses

(2008) Shinyoung Lee et al.   PLANT JOURNAL