Gene expression profiling of reproductive meristem types in early rice inflorescences by laser microdissection

An-2 Encodes a Cytokinin Synthesis Enzyme that Regulates Awn Length and Grain Production in Rice

(2015) Benguo Gu et al.   Molecular Plant

LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice

(2015) Lei Hua et al.   PLANT CELL

Axillary Meristem Formation in Rice Requires theWUSCHELOrthologTILLERS ABSENT1

(2015) Wakana Tanaka et al.   PLANT CELL

Coordinated regulation of vegetative and reproductive branching in rice

(2015) Lei Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of Inflorescence Branch Development in Rice Through a Novel Pathway Involving the Pentatricopeptide Repeat Protein sped1-D

(2014) Guanghuai Jiang et al.   GENETICS

Gene coexpression patterns during early development of the native Arabidopsis reproductive meristem: novel candidate developmental regulators and patterns of functional redundancy

(2014) Otho Mantegazza et al.   PLANT JOURNAL

Regulation of inflorescence architecture by cytokinins

(2014) Yingying Han et al.   Frontiers in Plant Science

Genes offering the potential for designing yield-related traits in rice

(2013) Mayuko Ikeda et al.   CURRENT OPINION IN PLANT BIOLOGY

The role of auxin in shaping shoot architecture

(2013) Andrea Gallavotti   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture

(2013) Z. Lu et al.   PLANT CELL

Rice LHS1/OsMADS1 Controls Floret Meristem Specification by Coordinated Regulation of Transcription Factors and Hormone Signaling Pathways

(2013) I. Khanday et al.   PLANT PHYSIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice

(2012) Rita Sharma et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Epistatic Natural Allelic Variation Reveals a Function of AGAMOUS-LIKE6 in Axillary Bud Formation inArabidopsis

(2012) Xueqing Huang et al.   PLANT CELL

Inflorescence Meristem Identity in Rice Is Specified by Overlapping Functions of Three AP1/FUL-Like MADS Box Genes and PAP2, a SEPALLATA MADS Box Gene

(2012) K. Kobayashi et al.   PLANT CELL

TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition

(2012) A. Yoshida et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

(2012) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice

(2011) Yutaka Sato et al.   BMC PLANT BIOLOGY

Flower development in rice

(2011) Hitoshi Yoshida et al.   JOURNAL OF EXPERIMENTAL BOTANY

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Auxin-Responsive OsMGH3, a Common Downstream Target of OsMADS1 and OsMADS6, Controls Rice Floret Fertility

(2011) Shri Ram Yadav et al.   PLANT AND CELL PHYSIOLOGY

Positive Autoregulation of a KNOX Gene Is Essential for Shoot Apical Meristem Maintenance in Rice

(2011) K. Tsuda et al.   PLANT CELL

Functional Analysis of All AGAMOUS Subfamily Members in Rice Reveals Their Roles in Reproductive Organ Identity Determination and Meristem Determinacy

(2011) Ludovico Dreni et al.   PLANT CELL

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1

(2011) Kyoko Ikeda-Kawakatsu et al.   PLANT JOURNAL

Genome-Wide Characterization of the HD-ZIP IV Transcription Factor Family in Maize: Preferential Expression in the Epidermis

(2011) M. Javelle et al.   PLANT PHYSIOLOGY

Rate of meristem maturation determines inflorescence architecture in tomato

(2011) S. J. Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes

(2011) Ziwen He et al.   PLoS Genetics

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

Ruffus: a lightweight Python library for computational pipelines

(2010) Leo Goodstadt   BIOINFORMATICS

Branching in rice

(2010) Yonghong Wang et al.   CURRENT OPINION IN PLANT BIOLOGY

Functional characterization of the HD-ZIP IV transcription factor OCL1 from maize

(2010) Nathalie Depège-Fargeix et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

OsSPL14 promotes panicle branching and higher grain productivity in rice

(2010) Kotaro Miura et al.   NATURE GENETICS

The SEPALLATA-Like Gene OsMADS34 Is Required for Rice Inflorescence and Spikelet Development

(2010) X. Gao et al.   PLANT PHYSIOLOGY

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice

(2009) Kaoru Kobayashi et al.   PLANT AND CELL PHYSIOLOGY

MOSAIC FLORAL ORGANS1, an AGL6-Like MADS Box Gene, Regulates Floral Organ Identity and Meristem Fate in Rice

(2009) S. Ohmori et al.   PLANT CELL

A dynamic gene expression atlas covering the entire life cycle of rice

(2009) Lei Wang et al.   PLANT JOURNAL

Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem

(2009) S. P. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

miR319a targeting ofTCP4is critical for petal growth and development inArabidopsis

(2009) Anwesha Nag et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice

(2008) Mukesh Jain et al.   FEBS Journal

Progress in ideotype breeding to increase rice yield potential

(2008) Shaobing Peng et al.   FIELD CROPS RESEARCH

Unequal Genetic Redundancy of Rice PISTILLATA Orthologs, OsMADS2 and OsMADS4, in Lodicule and Stamen Development

(2008) S.-G. Yao et al.   PLANT AND CELL PHYSIOLOGY

Activation of the Indole-3-Acetic Acid-Amido Synthetase GH3-8 Suppresses Expansin Expression and Promotes Salicylate- and Jasmonate-Independent Basal Immunity in Rice

(2008) X. Ding et al.   PLANT CELL

Gene Nomenclature System for Rice

(2008) Susan R. McCouch et al.   Rice