The plant epitranscriptome: revisiting pseudouridine and 2′‐ O ‐methyl RNA modifications
出版年份 2022 全文链接
标题
The plant epitranscriptome: revisiting pseudouridine and 2′‐
O
‐methyl RNA modifications
作者
关键词
-
出版物
PLANT BIOTECHNOLOGY JOURNAL
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2022-04-21
DOI
10.1111/pbi.13829
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- tRNA modification dynamics from individual organisms to metaepitranscriptomics of microbiomes
- (2022) Wen Zhang et al. MOLECULAR CELL
- Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants
- (2021) J. Azevedo-Favory et al. RNA Biology
- Analysis of RNA Modifications by Second- and Third-Generation Deep Sequencing: 2020 Update
- (2021) Yuri Motorin et al. Genes
- Spliceosomal snRNA Epitranscriptomics
- (2021) Pedro Morais et al. Frontiers in Genetics
- CPSF30-L-mediated recognition of mRNA m6A modification controls alternative polyadenylation of nitrate signaling-related gene transcripts in Arabidopsis
- (2021) Yifeng Hou et al. Molecular Plant
- Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing
- (2021) Oguzhan Begik et al. NATURE BIOTECHNOLOGY
- Profiling of RNA ribose methylation in Arabidopsis thaliana
- (2021) Songlin Wu et al. NUCLEIC ACIDS RESEARCH
- Pseudouridines on Trypanosoma brucei mRNAs are developmentally regulated: Implications to mRNA stability and protein binding
- (2021) K. Shanmugha Rajan et al. MOLECULAR MICROBIOLOGY
- Epitranscriptome engineering in crop improvement
- (2021) Lisha Shen et al. Molecular Plant
- RNA demethylation increases the yield and biomass of rice and potato plants in field trials
- (2021) Qiong Yu et al. NATURE BIOTECHNOLOGY
- Mapping of pseudouridine residues on viral and cellular transcripts using a novel antibody-based technique
- (2021) Cecilia Martinez Campos et al. RNA
- ALKBH10B, an mRNA m6A Demethylase, Modulates ABA Response During Seed Germination in Arabidopsis
- (2021) Jun Tang et al. Frontiers in Plant Science
- The Arabidopsis 2′-O-Ribose-Methylation and Pseudouridylation Landscape of rRNA in Comparison to Human and Yeast
- (2021) Deniz Streit et al. Frontiers in Plant Science
- Nanopore Dwell Time Analysis Permits Sequencing and Conformational Assignment of Pseudouridine in SARS-CoV-2
- (2021) Aaron M. Fleming et al. ACS Central Science
- 2′O-Ribose Methylation of Ribosomal RNAs: Natural Diversity in Living Organisms, Biological Processes, and Diseases
- (2021) Mariam Jaafar et al. Cells
- The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation
- (2021) Muthusamy Ramakrishnan et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Regulation of translation by site-specific ribosomal RNA methylation
- (2021) Martin D. Jansson et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Critical Contribution of Pseudouridine to mRNA COVID-19 Vaccines
- (2021) Pedro Morais et al. Frontiers in Cell and Developmental Biology
- Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification
- (2020) Matthew T Parker et al. eLife
- OsNSUN2-Mediated 5-Methylcytosine mRNA Modification Enhances Rice Adaptation to High Temperature
- (2020) Yongyan Tang et al. DEVELOPMENTAL CELL
- The large repertoire of 2’-O-methylation guided by C/D snoRNAs on Trypanosoma brucei rRNA
- (2020) K. Shanmugha Rajan et al. RNA Biology
- Direct Determination of Pseudouridine in RNA by Mass Spectrometry Coupled with Stable Isotope Labeling
- (2020) Yuka Yamaki et al. ANALYTICAL CHEMISTRY
- Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping
- (2020) Aldema Sas-Chen et al. NATURE
- H/ACA snoRNA levels are regulated during stem cell differentiation
- (2020) Kathleen L McCann et al. NUCLEIC ACIDS RESEARCH
- RNA 5-Methylcytosine Controls Plant Development and Environmental Adaptation
- (2020) Pingxian Zhang et al. TRENDS IN PLANT SCIENCE
- HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA
- (2020) Virginie Marchand et al. NUCLEIC ACIDS RESEARCH
- 2′-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states
- (2020) Hala Abou Assi et al. NUCLEIC ACIDS RESEARCH
- The increasing diversity and complexity of the RNA-binding protein repertoire in plants
- (2020) C. Marondedze PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Complete chemical structures of human mitochondrial tRNAs
- (2020) Takeo Suzuki et al. Nature Communications
- Pseudouridine-mediated translation control of mRNA by methionine aminoacyl tRNA synthetase
- (2020) Ofri Levi et al. NUCLEIC ACIDS RESEARCH
- The cardiac methylome: A hidden layer of RNA modifications to regulate gene expression
- (2020) K. Shanmugha Rajan et al. JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY
- A Role for Epigenetic Regulation in the Adaptation and Stress Responses of Non-model Plants
- (2019) Flávia Thiebaut et al. Frontiers in Plant Science
- Charging the code — tRNA modification complexes
- (2019) Rościsław Krutyhołowa et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Transcriptome-wide Mapping of Internal N7-Methylguanosine Methylome in Mammalian mRNA
- (2019) Li-Sheng Zhang et al. MOLECULAR CELL
- Messenger RNA Modifications in Plants
- (2019) Lisha Shen et al. TRENDS IN PLANT SCIENCE
- The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice
- (2019) Fan Zhang et al. PLoS Genetics
- Epitranscriptomic RNA Methylation in Plant Development and Abiotic Stress Responses
- (2019) Jianzhong Hu et al. Frontiers in Plant Science
- Transcriptome-wide analysis of pseudouridylation of mRNA and non-coding RNAs in Arabidopsis
- (2019) Lirong Sun et al. JOURNAL OF EXPERIMENTAL BOTANY
- Pseudouridines on Trypanosoma brucei spliceosomal small nuclear RNAs and their implication for RNA and protein interactions
- (2019) K Shanmugha Rajan et al. NUCLEIC ACIDS RESEARCH
- Discovering and Mapping the Modified Nucleotides That Comprise the Epitranscriptome of mRNA
- (2019) Bastian Linder et al. Cold Spring Harbor Perspectives in Biology
- Modification of messenger RNA by 2′-O-methylation regulates gene expression in vivo
- (2019) Brittany A. Elliott et al. Nature Communications
- Reading, writing and erasing mRNA methylation
- (2019) Sara Zaccara et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Developmental changes of rRNA ribose methylations in the mouse
- (2019) Jade Hebras et al. RNA Biology
- A single H/ACA small nucleolar RNA mediates tumor suppression downstream of oncogenic RAS
- (2019) Mary McMahon et al. eLife
- In search of the mRNA modification landscape in plants
- (2019) Jagna Chmielowska-Bąk et al. BMC PLANT BIOLOGY
- Emerging roles of RNA-binding proteins in plant development
- (2019) Hyunwoo Cho et al. CURRENT OPINION IN PLANT BIOLOGY
- Occurrence and functions of m6A and other covalent modifications in plant mRNA
- (2019) Laura Arribas-Hernández et al. PLANT PHYSIOLOGY
- Pseudouridinylation of mRNA coding sequences alters translation
- (2019) Daniel E. Eyler et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unique Aspects of rRNA Biogenesis in Trypanosomatids
- (2019) K. Shanmugha Rajan et al. TRENDS IN PARASITOLOGY
- Antibody cross-reactivity accounts for widespread appearance of m1A in 5’UTRs
- (2019) Anya V. Grozhik et al. Nature Communications
- Genome-wide identification of short 2′,3′-cyclic phosphate-containing RNAs and their regulation in aging
- (2019) Megumi Shigematsu et al. PLoS Genetics
- Epigenetic Modifications of mRNA and DNA in Plants
- (2019) Zhe Liang et al. Molecular Plant
- Dynamics and function of DNA methylation in plants
- (2018) Huiming Zhang et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- An m6A-YTH Module Controls Developmental Timing and Morphogenesis in Arabidopsis
- (2018) Laura Arribas-Hernández et al. PLANT CELL
- The m6A Reader ECT2 Controls Trichome Morphology by Affecting mRNA Stability in Arabidopsis
- (2018) Lian-Huan Wei et al. PLANT CELL
- The YTH Domain Protein ECT2 Is an m6A Reader Required for Normal Trichome Branching in Arabidopsis
- (2018) Jérémy Scutenaire et al. PLANT CELL
- Landscape of the complete RNA chemical modifications in the human 80S ribosome
- (2018) Masato Taoka et al. NUCLEIC ACIDS RESEARCH
- Epitranscriptomic Code and Its Alterations in Human Disease
- (2018) Rajashekar Varma Kadumuri et al. TRENDS IN MOLECULAR MEDICINE
- Acetylation of Cytidine in mRNA Promotes Translation Efficiency
- (2018) Daniel Arango et al. CELL
- Sequencing-based methods for detection and quantitation of ribose methylations in RNA
- (2018) Nicolai Krogh et al. METHODS
- N6-Methyladenosine Inhibits Local Ribonucleolytic Cleavage to Stabilize mRNAs in Arabidopsis
- (2018) Stephen J. Anderson et al. Cell Reports
- TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code
- (2017) Modi Safra et al. GENOME RESEARCH
- Pseudouridine Modification Inhibits Muscleblind-like 1 (MBNL1) Binding to CCUG Repeats and Minimally Structured RNA through Reduced RNA Flexibility
- (2017) Elaine deLorimier et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Base-Resolution Mapping Reveals Distinct m 1 A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts
- (2017) Xiaoyu Li et al. MOLECULAR CELL
- 5-Methylcytosine RNA Methylation in Arabidopsis Thaliana
- (2017) Xuean Cui et al. Molecular Plant
- The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution
- (2017) Modi Safra et al. NATURE
- Identification of factors required for m6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI
- (2017) Kamil Růžička et al. NEW PHYTOLOGIST
- ALKBH10B Is an RNAN6-Methyladenosine Demethylase Affecting Arabidopsis Floral Transition
- (2017) Hong-Chao Duan et al. PLANT CELL
- Transcriptome-Wide Mapping of RNA 5-Methylcytosine in Arabidopsis mRNAs and Noncoding RNAs
- (2017) Rakesh David et al. PLANT CELL
- Arabidopsism6A demethylase activity modulates viral infection of a plant virus and the m6A abundance in its genomic RNAs
- (2017) Mireya Martínez-Pérez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes
- (2017) Jenny Erales et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High-throughput and site-specific identification of 2′- O -methylation sites using ribose oxidation sequencing (RibOxi-seq)
- (2017) Yinzhou Zhu et al. RNA
- mRNA pseudouridylation affects RNA metabolism in the parasite Toxoplasma gondii
- (2017) Margaret A. Nakamoto et al. RNA
- Pseudouridine and N 6 -methyladenosine modifications weaken PUF protein/RNA interactions
- (2017) Pavanapuresan P. Vaidyanathan et al. RNA
- Functional Disruption of a Chloroplast Pseudouridine Synthase Desensitizes Arabidopsis Plants to Phosphate Starvation
- (2017) Shan Lu et al. Frontiers in Plant Science
- N 6 -Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis
- (2016) Lisha Shen et al. DEVELOPMENTAL CELL
- Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly
- (2016) Guowei Wu et al. EMBO JOURNAL
- Deciphering the epitranscriptome: A green perspective
- (2016) Alice Burgess et al. Journal of Integrative Plant Biology
- The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA
- (2016) Dan Dominissini et al. NATURE
- Reversible methylation of m6Am in the 5′ cap controls mRNA stability
- (2016) Jan Mauer et al. NATURE
- Transcriptome-wide mapping reveals reversible and dynamic N1-methyladenosine methylome
- (2016) Xiaoyu Li et al. Nature Chemical Biology
- High-throughput single-base resolution mapping of RNA 2΄-O-methylated residues
- (2016) Danny Incarnato et al. NUCLEIC ACIDS RESEARCH
- Illumina-based RiboMethSeq approach for mapping of 2′-O-Me residues in RNA
- (2016) Virginie Marchand et al. NUCLEIC ACIDS RESEARCH
- Profiling of 2′-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity
- (2016) Nicolai Krogh et al. NUCLEIC ACIDS RESEARCH
- A pseudouridylation switch in rRNA is implicated in ribosome function during the life cycle of Trypanosoma brucei
- (2016) Vaibhav Chikne et al. Scientific Reports
- Uridylation and PABP Cooperate to Repair mRNA Deadenylated Ends in Arabidopsis
- (2016) Hélène Zuber et al. Cell Reports
- What do we know about ribosomal RNA methylation in Escherichia coli?
- (2015) O.V. Sergeeva et al. BIOCHIMIE
- Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
- (2015) Xiaoyu Li et al. Nature Chemical Biology
- Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly
- (2015) Yury S Polikanov et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- From guide to target: molecular insights into eukaryotic RNA-interference machinery
- (2015) Jonathan J Ipsaro et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- A mass spectrometry-based method for direct determination of pseudouridine in RNA
- (2015) Yoshio Yamauchi et al. NUCLEIC ACIDS RESEARCH
- Structural insights into the role of rRNA modifications in protein synthesis and ribosome assembly
- (2015) Yury S Polikanov et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- From guide to target: molecular insights into eukaryotic RNA-interference machinery
- (2015) Jonathan J Ipsaro et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Pseudouridine: Still mysterious, but never a fake (uridine)!
- (2015) Felix Spenkuch et al. RNA Biology
- Profiling of Ribose Methylations in RNA by High-Throughput Sequencing
- (2014) Ulf Birkedal et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
- (2014) Schraga Schwartz et al. CELL
- Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
- (2014) Thomas M. Carlile et al. NATURE
- Gene expression regulation mediated through reversible m6A RNA methylation
- (2014) Ye Fu et al. NATURE REVIEWS GENETICS
- The dynamic epitranscriptome: N6-methyladenosine and gene expression control
- (2014) Kate D. Meyer et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Modifications to toxic CUG RNAs induce structural stability, rescue mis-splicing in a myotonic dystrophy cell model and reduce toxicity in a myotonic dystrophy zebrafish model
- (2014) Elaine deLorimier et al. NUCLEIC ACIDS RESEARCH
- Partial Methylation at Am100 in 18S rRNA of Baker's Yeast Reveals Ribosome Heterogeneity on the Level of Eukaryotic rRNA Modification
- (2014) Markus Buchhaupt et al. PLoS One
- Transcriptome-Wide Mapping of Pseudouridines: Pseudouridine Synthases Modify Specific mRNAs in S. cerevisiae
- (2014) Alexander F. Lovejoy et al. PLoS One
- Transcriptome-wide N6-methyladenosine profiling of rice callus and leaf reveals the presence of tissue-specific competitors involved in selective mRNA modification
- (2014) Yuli Li et al. RNA Biology
- Epigenetic Regulation in Plant Responses to the Environment
- (2014) D. C. Baulcombe et al. Cold Spring Harbor Perspectives in Biology
- Unique features of the m6A methylome in Arabidopsis thaliana
- (2014) Guan-Zheng Luo et al. Nature Communications
- A Pseudouridine Residue in the Spliceosome Core Is Part of the Filamentous Growth Program in Yeast
- (2014) Anindita Basak et al. Cell Reports
- RNA pseudouridylation: new insights into an old modification
- (2013) Junhui Ge et al. TRENDS IN BIOCHEMICAL SCIENCES
- H/ACA Small RNA Dysfunctions in Disease Reveal Key Roles for Noncoding RNA Modifications in Hematopoietic Stem Cell Differentiation
- (2013) Cristian Bellodi et al. Cell Reports
- Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing
- (2013) Shivendra Kishore et al. GENOME BIOLOGY
- Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
- (2012) Kate D. Meyer et al. CELL
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- MODOMICS: a database of RNA modification pathways—2013 update
- (2012) Magdalena A. Machnicka et al. NUCLEIC ACIDS RESEARCH
- Adenosine Methylation in Arabidopsis mRNA is Associated with the 3′ End and Reduced Levels Cause Developmental Defects
- (2012) Zsuzsanna Bodi et al. Frontiers in Plant Science
- The birth of the Epitranscriptome: deciphering the function of RNA modifications
- (2012) Yogesh Saletore et al. GENOME BIOLOGY
- rRNA Pseudouridylation Defects Affect Ribosomal Ligand Binding and Translational Fidelity from Yeast to Human Cells
- (2011) Karen Jack et al. MOLECULAR CELL
- U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP
- (2010) Guowei Wu et al. EMBO JOURNAL
- A Flexible RNA Backbone within the Polypyrimidine Tract Is Required for U2AF65 Binding and Pre-mRNA Splicing In Vivo
- (2010) C. Chen et al. MOLECULAR AND CELLULAR BIOLOGY
- Yeast Pre-rRNA Processing and Modification Occur Cotranscriptionally
- (2010) Martin Koš et al. MOLECULAR CELL
- Strong dependence between functional domains in a dual-function snoRNA infers coupling of rRNA processing and modification events
- (2010) Xue-hai Liang et al. NUCLEIC ACIDS RESEARCH
- Spliceosomal snRNA modifications and their function
- (2010) John Karijolich et al. RNA Biology
- The Box H/ACA Ribonucleoprotein Complex: Interplay of RNA and Protein Structures in Post-transcriptional RNA Modification
- (2009) Tomoko Hamma et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis
- (2009) Ho-Ming Chen et al. NUCLEIC ACIDS RESEARCH
- Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing
- (2009) X.-h. Liang et al. RNA
- X-ray Structures of U2 snRNA−Branchpoint Duplexes Containing Conserved Pseudouridines†‡
- (2008) Yuan Lin et al. BIOCHEMISTRY
- Ribosome Performance Is Enhanced by a Rich Cluster of Pseudouridines in the A-site Finger Region of the Large Subunit
- (2008) Dorota Piekna-Przybylska et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor
- (2008) S. Zhong et al. PLANT CELL
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