Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing
出版年份 2021 全文链接
标题
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing
作者
关键词
-
出版物
NATURE BIOTECHNOLOGY
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-05-14
DOI
10.1038/s41587-021-00915-6
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Methplotlib: analysis of modified nucleotides from nanopore sequencing
- (2020) Wouter De Coster et al. BIOINFORMATICS
- The full-length transcriptome of C. elegans using direct RNA sequencing
- (2020) Nathan P. Roach et al. GENOME RESEARCH
- LARP7-Mediated U6 snRNA Modification Ensures Splicing Fidelity and Spermatogenesis in Mice
- (2020) Xin Wang et al. MOLECULAR CELL
- Molecular Mechanisms Driving mRNA Degradation by m6A Modification
- (2020) Yujin Lee et al. TRENDS IN GENETICS
- Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification
- (2020) Matthew T Parker et al. eLife
- The Architecture of SARS-CoV-2 Transcriptome
- (2020) Dongwan Kim et al. CELL
- Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping
- (2020) Aldema Sas-Chen et al. NATURE
- Decoding the epitranscriptional landscape from native RNA sequences
- (2020) Piroon Jenjaroenpun et al. NUCLEIC ACIDS RESEARCH
- New Twists in Detecting mRNA Modification Dynamics
- (2020) Ina Anreiter et al. TRENDS IN BIOTECHNOLOGY
- Molecular barcoding of native RNAs using nanopore sequencing and deep learning
- (2020) Martin A. Smith et al. GENOME RESEARCH
- Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing
- (2020) Alexander M. Price et al. Nature Communications
- Methods for RNA Modification Mapping Using Deep Sequencing: Established and New Emerging Technologies
- (2019) Yuri Motorin et al. Genes
- Single-molecule sequencing detection of N6-methyladenine in microbial reference materials
- (2019) Alexa B. R. McIntyre et al. Nature Communications
- Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen
- (2019) Daniel P. Depledge et al. Nature Communications
- METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation
- (2019) Luca Pandolfini et al. MOLECULAR CELL
- Transcriptome-wide Mapping of Internal N7-Methylguanosine Methylome in Mammalian mRNA
- (2019) Li-Sheng Zhang et al. MOLECULAR CELL
- RNA modifications regulating cell fate in cancer
- (2019) Sylvain Delaunay et al. NATURE CELL BIOLOGY
- Genome-wide identification of mRNA 5-methylcytosine in mammals
- (2019) Tao Huang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data
- (2019) Qian Liu et al. Nature Communications
- Developmental changes of rRNA ribose methylations in the mouse
- (2019) Jade Hebras et al. RNA Biology
- Regulation of Co-transcriptional Pre-mRNA Splicing by m6A through the Low-Complexity Protein hnRNPG
- (2019) Katherine I. Zhou et al. MOLECULAR CELL
- Nanopore native RNA sequencing of a human poly(A) transcriptome
- (2019) Rachael E. Workman et al. NATURE METHODS
- Direct RNA sequencing enables m6A detection in endogenous transcript isoforms at base-specific resolution
- (2019) Daniel A. Lorenz et al. RNA
- Accurate detection of m6A RNA modifications in native RNA sequences
- (2019) Huanle Liu et al. Nature Communications
- Antibody cross-reactivity accounts for widespread appearance of m1A in 5’UTRs
- (2019) Anya V. Grozhik et al. Nature Communications
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- METTL14 Inhibits Hematopoietic Stem/Progenitor Differentiation and Promotes Leukemogenesis via mRNA m 6 A Modification
- (2018) Hengyou Weng et al. Cell Stem Cell
- Stress-induced Pseudouridylation Alters the Structural Equilibrium of Yeast U2 snRNA Stem II
- (2018) Clarisse van der Feltz et al. JOURNAL OF MOLECULAR BIOLOGY
- Highly parallel direct RNA sequencing on an array of nanopores
- (2018) Daniel R Garalde et al. NATURE METHODS
- Transient N-6-Methyladenosine Transcriptome Sequencing Reveals a Regulatory Role of m6A in Splicing Efficiency
- (2018) Annita Louloupi et al. Cell Reports
- Landscape of the complete RNA chemical modifications in the human 80S ribosome
- (2018) Masato Taoka et al. NUCLEIC ACIDS RESEARCH
- AlkAniline-Seq: Profiling of m7 G and m3 C RNA Modifications at Single Nucleotide Resolution
- (2018) Virginie Marchand et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Acetylation of Cytidine in mRNA Promotes Translation Efficiency
- (2018) Daniel Arango et al. CELL
- Base-Resolution Mapping Reveals Distinct m 1 A Methylome in Nuclear- and Mitochondrial-Encoded Transcripts
- (2017) Xiaoyu Li et al. MOLECULAR CELL
- Visualization of chemical modifications in the human 80S ribosome structure
- (2017) S. Kundhavai Natchiar et al. NATURE
- The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution
- (2017) Modi Safra et al. NATURE
- The N6-methyladenosine (m6A)-forming enzyme METTL3 controls myeloid differentiation of normal hematopoietic and leukemia cells
- (2017) Ly P Vu et al. NATURE MEDICINE
- Epitranscriptome sequencing technologies: decoding RNA modifications
- (2017) Xiaoyu Li et al. NATURE METHODS
- Charting the unknown epitranscriptome
- (2017) Eva Maria Novoa et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes
- (2017) Jenny Erales et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A resource for functional profiling of noncoding RNA in the yeast Saccharomyces cerevisiae
- (2017) Steven Parker et al. RNA
- The RNA modification landscape in human disease
- (2017) Nicky Jonkhout et al. RNA
- The m6A pathway facilitates sex determination in Drosophila
- (2017) Lijuan Kan et al. Nature Communications
- Understanding RNA modifications: the promises and technological bottlenecks of the ‘epitranscriptome’
- (2017) Matthias Schaefer et al. Open Biology
- m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination
- (2016) Irmgard U. Haussmann et al. NATURE
- m6A modulates neuronal functions and sex determination in Drosophila
- (2016) Tina Lence et al. NATURE
- The complete chemical structure ofSaccharomyces cerevisiaerRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9
- (2016) Masato Taoka et al. NUCLEIC ACIDS RESEARCH
- Profiling of 2′-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity
- (2016) Nicolai Krogh et al. NUCLEIC ACIDS RESEARCH
- Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function
- (2016) Katherine E. Sloan et al. RNA Biology
- Transcriptome-wide distribution and function of RNA hydroxymethylcytosine
- (2016) B. Delatte et al. SCIENCE
- Fast and sensitive mapping of nanopore sequencing reads with GraphMap
- (2016) Ivan Sović et al. Nature Communications
- What do we know about ribosomal RNA methylation in Escherichia coli?
- (2015) O.V. Sergeeva et al. BIOCHIMIE
- Structure of the E. coli ribosome–EF-Tu complex at
- (2015) Niels Fischer et al. NATURE
- Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
- (2015) Xiaoyu Li et al. Nature Chemical Biology
- A complete bacterial genome assembled de novo using only nanopore sequencing data
- (2015) Nicholas J Loman et al. NATURE METHODS
- A mass spectrometry-based method for comprehensive quantitative determination of post-transcriptional RNA modifications: the complete chemical structure ofSchizosaccharomyces pomberibosomal RNAs
- (2015) Masato Taoka et al. NUCLEIC ACIDS RESEARCH
- m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation
- (2015) Shay Geula et al. SCIENCE
- ‘View From A Bridge’: A New Perspective on Eukaryotic rRNA Base Modification
- (2015) Sunny Sharma et al. TRENDS IN BIOCHEMICAL SCIENCES
- The Pivotal Regulatory Landscape of RNA Modifications
- (2014) Sheng Li et al. Annual Review of Genomics and Human Genetics
- Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
- (2014) Schraga Schwartz et al. CELL
- Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
- (2014) Thomas M. Carlile et al. NATURE
- Partial Methylation at Am100 in 18S rRNA of Baker's Yeast Reveals Ribosome Heterogeneity on the Level of Eukaryotic rRNA Modification
- (2014) Markus Buchhaupt et al. PLoS One
- Transcriptome-Wide Mapping of Pseudouridines: Pseudouridine Synthases Modify Specific mRNAs in S. cerevisiae
- (2014) Alexander F. Lovejoy et al. PLoS One
- IVT-seq reveals extreme bias in RNA sequencing
- (2014) Nicholas F Lahens et al. GENOME BIOLOGY
- p53 Acts as a Safeguard of Translational Control by Regulating Fibrillarin and rRNA Methylation in Cancer
- (2013) Virginie Marcel et al. CANCER CELL
- Characterizing 5-methylcytosine in the mammalian epitranscriptome
- (2013) Shobbir Hussain et al. GENOME BIOLOGY
- Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
- (2012) Kate D. Meyer et al. CELL
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- The SNORD115 (H/MBII-52) and SNORD116 (H/MBII-85) gene clusters at the imprinted Prader-Willi locus generate canonical box C/D snoRNAs
- (2012) M.-L. Bortolin-Cavaille et al. NUCLEIC ACIDS RESEARCH
- Requirement of rRNA Methylation for 80S Ribosome Assembly on a Cohort of Cellular Internal Ribosome Entry Sites
- (2011) A. Basu et al. MOLECULAR AND CELLULAR BIOLOGY
- rRNA Pseudouridylation Defects Affect Ribosomal Ligand Binding and Translational Fidelity from Yeast to Human Cells
- (2011) Karen Jack et al. MOLECULAR CELL
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Loss of ribosomal RNA modification causes developmental defects in zebrafish
- (2011) Sayomi Higa-Nakamine et al. NUCLEIC ACIDS RESEARCH
- Small nucleolar RNA 42 acts as an oncogene in lung tumorigenesis
- (2011) Y-P Mei et al. ONCOGENE
- Loss of Function of the Tumor Suppressor DKC1 Perturbs p27 Translation Control and Contributes to Pituitary Tumorigenesis
- (2010) C. Bellodi et al. CANCER RESEARCH
- U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP
- (2010) Guowei Wu et al. EMBO JOURNAL
- Small nucleolar RNA signatures as biomarkers for non-small-cell lung cancer
- (2010) Jipei Liao et al. Molecular Cancer
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Dysregulation of Ribosome Biogenesis and Translational Capacity Is Associated with Tumor Progression of Human Breast Cancer Cells
- (2009) Stéphane Belin et al. PLoS One
- Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster
- (2008) Trilochan Sahoo et al. NATURE GENETICS
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