标题
Deciphering the epitranscriptome: A green perspective
作者
关键词
-
出版物
Journal of Integrative Plant Biology
Volume 58, Issue 10, Pages 822-835
出版商
Wiley
发表日期
2016-05-12
DOI
10.1111/jipb.12483
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The emerging epitranscriptomics of long noncoding RNAs
- (2016) Andrew Shafik et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Nuclear m 6 A Reader YTHDC1 Regulates mRNA Splicing
- (2016) Wen Xiao et al. MOLECULAR CELL
- The dynamic N1-methyladenosine methylome in eukaryotic messenger RNA
- (2016) Dan Dominissini et al. NATURE
- Lateral Thinking: How Histone Modifications Regulate Gene Expression
- (2016) Moyra Lawrence et al. TRENDS IN GENETICS
- Conservation of tRNA and rRNA 5-methylcytosine in the kingdom Plantae
- (2015) Alice Louise Burgess et al. BMC PLANT BIOLOGY
- HNRNPA2B1 Is a Mediator of m6A-Dependent Nuclear RNA Processing Events
- (2015) Claudio R. Alarcón et al. CELL
- N6-methyladenosine Modulates Messenger RNA Translation Efficiency
- (2015) Xiao Wang et al. CELL
- m6A RNA Methylation Is Regulated by MicroRNAs and Promotes Reprogramming to Pluripotency
- (2015) Tong Chen et al. Cell Stem Cell
- The Arabidopsis epitranscriptome
- (2015) Rupert G Fray et al. CURRENT OPINION IN PLANT BIOLOGY
- A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation
- (2015) Shengdong Ke et al. GENES & DEVELOPMENT
- Structure and Thermodynamics of N6-Methyladenosine in RNA: A Spring-Loaded Base Modification
- (2015) Caroline Roost et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The human 18S rRNA base methyltransferases DIMT1L and WBSCR22-TRMT112 but not rRNA modification are required for ribosome biogenesis
- (2015) Christiane Zorbas et al. MOLECULAR BIOLOGY OF THE CELL
- N6-methyladenosine marks primary microRNAs for processing
- (2015) Claudio R. Alarcón et al. NATURE
- Dynamic m6A mRNA methylation directs translational control of heat shock response
- (2015) Jun Zhou et al. NATURE
- N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
- (2015) Nian Liu et al. NATURE
- Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
- (2015) Xiaoyu Li et al. Nature Chemical Biology
- Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
- (2015) Bastian Linder et al. NATURE METHODS
- Widespread occurrence ofN6-methyladenosine in bacterial mRNA
- (2015) Xin Deng et al. NUCLEIC ACIDS RESEARCH
- Nucleotide modifications within bacterial messenger RNAs regulate their translation and are able to rewire the genetic code
- (2015) Thomas Philipp Hoernes et al. NUCLEIC ACIDS RESEARCH
- Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis
- (2015) Lee E. Vandivier et al. PLANT CELL
- Loss of a Conserved tRNA Anticodon Modification Perturbs Plant Immunity
- (2015) Vicente Ramírez et al. PLoS Genetics
- N6-Adenosine Methylation in MiRNAs
- (2015) Tea Berulava et al. PLoS One
- High-ResolutionN6-Methyladenosine (m6A) Map Using Photo-Crosslinking-Assisted m6A Sequencing
- (2014) Kai Chen et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA
- (2014) Schraga Schwartz et al. CELL
- FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis
- (2014) Xu Zhao et al. CELL RESEARCH
- Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase
- (2014) Xiao-Li Ping et al. CELL RESEARCH
- Role of RNA methyltransferases in tissue renewal and pathology
- (2014) Sandra Blanco et al. CURRENT OPINION IN CELL BIOLOGY
- Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
- (2014) S. Blanco et al. EMBO JOURNAL
- The Entamoeba histolytica Dnmt2 Homolog (Ehmeth) Confers Resistance to Nitrosative Stress
- (2014) Rivi Hertz et al. EUKARYOTIC CELL
- CPSF30 and Wdr33 directly bind to AAUAAA in mammalian mRNA 3′ processing
- (2014) Serena L. Chan et al. GENES & DEVELOPMENT
- Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
- (2014) Thomas M. Carlile et al. NATURE
- N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells
- (2014) Yang Wang et al. NATURE CELL BIOLOGY
- Genome-Wide Identification, Biochemical Characterization, and Expression Analyses of the YTH Domain-Containing RNA-Binding Protein Family in Arabidopsis and Rice
- (2014) Dayong Li et al. PLANT MOLECULAR BIOLOGY REPORTER
- The Polyadenylation Factor Subunit CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR30: A Key Factor of Programmed Cell Death and a Regulator of Immunity in Arabidopsis
- (2014) Q. Bruggeman et al. PLANT PHYSIOLOGY
- Transcriptome-Wide Mapping of Pseudouridines: Pseudouridine Synthases Modify Specific mRNAs in S. cerevisiae
- (2014) Alexander F. Lovejoy et al. PLoS One
- Transcriptome-wide N6-methyladenosine profiling of rice callus and leaf reveals the presence of tissue-specific competitors involved in selective mRNA modification
- (2014) Yuli Li et al. RNA Biology
- A cluster of methylations in the domain IV of 25S rRNA is required for ribosome stability
- (2014) Andriana Gigova et al. RNA
- Role of tRNA modifications in human diseases
- (2014) Adrian Gabriel Torres et al. TRENDS IN MOLECULAR MEDICINE
- Unique features of the m6A methylome in Arabidopsis thaliana
- (2014) Guan-Zheng Luo et al. Nature Communications
- Perturbation of m6A Writers Reveals Two Distinct Classes of mRNA Methylation at Internal and 5′ Sites
- (2014) Schraga Schwartz et al. Cell Reports
- An overview of pre-ribosomal RNA processing in eukaryotes
- (2014) Anthony K. Henras et al. Wiley Interdisciplinary Reviews-RNA
- High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
- (2013) Schraga Schwartz et al. CELL
- RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock
- (2013) Jean-Michel Fustin et al. CELL
- Total Synthesis of the Hypermodified RNA Bases Wybutosine and Hydroxywybutosine and Their Quantification Together with Other Modified RNA Bases in Plant Materials
- (2013) Antje Hienzsch et al. CHEMISTRY-A EUROPEAN JOURNAL
- Whole exome sequencing unravels disease-causing genes in consanguineous families in Qatar
- (2013) S. Fahiminiya et al. CLINICAL GENETICS
- Efficient RNA virus control in Drosophila requires the RNA methyltransferase Dnmt2
- (2013) Zeljko Durdevic et al. EMBO REPORTS
- Identification of differentially methylated regions during vernalization revealed a role for RNA methyltransferases in bolting
- (2013) Claire Hébrard et al. JOURNAL OF EXPERIMENTAL BOTANY
- The Mouse Cytosine-5 RNA Methyltransferase NSun2 Is a Component of the Chromatoid Body and Required for Testis Differentiation
- (2013) S. Hussain et al. MOLECULAR AND CELLULAR BIOLOGY
- N6-methyladenosine-dependent regulation of messenger RNA stability
- (2013) Xiao Wang et al. NATURE
- Identification of direct targets and modified bases of RNA cytosine methyltransferases
- (2013) Vahid Khoddami et al. NATURE BIOTECHNOLOGY
- A METTL3–METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation
- (2013) Jianzhao Liu et al. Nature Chemical Biology
- Importance of adenosine-to-inosine editing adjacent to the anticodon in an Arabidopsis alanine tRNA under environmental stress
- (2013) Wenbin Zhou et al. NUCLEIC ACIDS RESEARCH
- Yeast Nop2 and Rcm1 methylate C2870 and C2278 of the 25S rRNA, respectively
- (2013) Sunny Sharma et al. NUCLEIC ACIDS RESEARCH
- Long non-coding RNAs as targets for cytosine methylation
- (2013) Thomas Amort et al. RNA Biology
- HAMR: high-throughput annotation of modified ribonucleotides
- (2013) P. Ryvkin et al. RNA
- RNA pseudouridylation: new insights into an old modification
- (2013) Junhui Ge et al. TRENDS IN BIOCHEMICAL SCIENCES
- The RNA Methyltransferase Dnmt2 Is Required for Efficient Dicer-2-Dependent siRNA Pathway Activity in Drosophila
- (2013) Zeljko Durdevic et al. Cell Reports
- NSun2-Mediated Cytosine-5 Methylation of Vault Noncoding RNA Determines Its Processing into Regulatory Small RNAs
- (2013) Shobbir Hussain et al. Cell Reports
- Transcriptome-Wide Mapping of 5-methylcytidine RNA Modifications in Bacteria, Archaea, and Yeast Reveals m5C within Archaeal mRNAs
- (2013) Sarit Edelheit et al. PLoS Genetics
- Mutation in NSUN2, which Encodes an RNA Methyltransferase, Causes Autosomal-Recessive Intellectual Disability
- (2012) Muzammil Ahmad Khan et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Mutations in NSUN2 Cause Autosomal- Recessive Intellectual Disability
- (2012) Lia Abbasi-Moheb et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Biosynthesis and Function of Posttranscriptional Modifications of Transfer RNAs
- (2012) Basma El Yacoubi et al. Annual Review of Genetics
- Plant polyadenylation factors: conservation and variety in the polyadenylation complex in plants
- (2012) Arthur G Hunt et al. BMC GENOMICS
- Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
- (2012) Kate D. Meyer et al. CELL
- Whole exome sequencing identifies a splicing mutation inNSUN2as a cause of a Dubowitz-like syndrome
- (2012) Fernando Jose Martinez et al. JOURNAL OF MEDICAL GENETICS
- ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility
- (2012) Guanqun Zheng et al. MOLECULAR CELL
- Increased Erythropoiesis in Mice Injected With Submicrogram Quantities of Pseudouridine-containing mRNA Encoding Erythropoietin
- (2012) Katalin Karikó et al. MOLECULAR THERAPY
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
- (2012) Francesca Tuorto et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
- (2012) Jeffrey E. Squires et al. NUCLEIC ACIDS RESEARCH
- MODOMICS: a database of RNA modification pathways—2013 update
- (2012) Magdalena A. Machnicka et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Control of Polyadenylation Site Choice by CPSF30 in Arabidopsis
- (2012) P. E. Thomas et al. PLANT CELL
- Nuclear Ribosome Biogenesis Mediated by the DIM1A rRNA Dimethylase Is Required for Organized Root Growth and Epidermal Patterning in Arabidopsis
- (2012) Y. Wieckowski et al. PLANT CELL
- Novel AlkB Dioxygenases—Alternative Models for In Silico and In Vivo Studies
- (2012) Damian Mielecki et al. PLoS One
- tRNAHis 5-methylcytidine levels increase in response to several growth arrest conditions in Saccharomyces cerevisiae
- (2012) M. A. Preston et al. RNA
- Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins
- (2012) Clement T.Y. Chan et al. Nature Communications
- Transfer RNA modifications: nature's combinatorial chemistry playground
- (2012) Jane E. Jackman et al. Wiley Interdisciplinary Reviews-RNA
- Adenosine Methylation in Arabidopsis mRNA is Associated with the 3′ End and Reduced Levels Cause Developmental Defects
- (2012) Zsuzsanna Bodi et al. Frontiers in Plant Science
- Transfer RNA Methytransferases and Their Corresponding Modifications in Budding Yeast and Humans: Activities, Predications, and Potential Roles in Human Health
- (2011) William L. Towns et al. DNA AND CELL BIOLOGY
- Converting nonsense codons into sense codons by targeted pseudouridylation
- (2011) John Karijolich et al. NATURE
- N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
- (2011) Guifang Jia et al. Nature Chemical Biology
- Pseudouridine synthase 1: a site-specific synthase without strict sequence recognition requirements
- (2011) B. S. Sibert et al. NUCLEIC ACIDS RESEARCH
- Roles of Trm9- and ALKBH8-like proteins in the formation of modified wobble uridines in Arabidopsis tRNA
- (2011) Vibeke Leihne et al. NUCLEIC ACIDS RESEARCH
- Drosophila Inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis
- (2011) C. F. Hongay et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The RNA–Methyltransferase Misu (NSun2) Poises Epidermal Stem Cells to Differentiate
- (2011) Sandra Blanco et al. PLoS Genetics
- RNA nucleotide methylation
- (2011) Yuri Motorin et al. Wiley Interdisciplinary Reviews-RNA
- Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana
- (2010) Peng Chen et al. BMC PLANT BIOLOGY
- Highly Efficient Reprogramming to Pluripotency and Directed Differentiation of Human Cells with Synthetic Modified mRNA
- (2010) Luigi Warren et al. Cell Stem Cell
- tRNA biology charges to the front
- (2010) E. M. Phizicky et al. GENES & DEVELOPMENT
- RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
- (2010) M. Schaefer et al. GENES & DEVELOPMENT
- Elongator function in tRNA wobble uridine modification is conserved between yeast and plants
- (2010) Constance Mehlgarten et al. MOLECULAR MICROBIOLOGY
- APUM23, a nucleolar Puf domain protein, is involved in pre-ribosomal RNA processing and normal growth patterning in Arabidopsis
- (2010) Nazia Abbasi et al. PLANT JOURNAL
- A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress
- (2010) Clement T. Y. Chan et al. PLoS Genetics
- Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana
- (2009) Kei Iida et al. BMC GENOMICS
- Phylogenetic analysis of the eukaryotic RNA (cytosine-5)-methyltransferases
- (2009) Athanasia Pavlopoulou et al. GENOMICS
- 5-methylcytosine in RNA: detection, enzymatic formation and biological functions
- (2009) Yuri Motorin et al. NUCLEIC ACIDS RESEARCH
- Elongator mediates ABA responses, oxidative stress resistance and anthocyanin biosynthesis in Arabidopsis
- (2009) Xiaofeng Zhou et al. PLANT JOURNAL
- Coordination of cell proliferation and cell expansion mediated by ribosome-related processes in the leaves ofArabidopsis thaliana
- (2009) Ushio Fujikura et al. PLANT JOURNAL
- A mitochondrial rRNA dimethyladenosine methyltransferase in Arabidopsis
- (2009) Uwe Richter et al. PLANT JOURNAL
- The Arabidopsis SMO2, a homologue of yeast TRM112, modulates progression of cell division during organ growth
- (2009) Zhubing Hu et al. PLANT JOURNAL
- A role for the ribosome in development
- (2009) Mary E. Byrne TRENDS IN PLANT SCIENCE
- DNA methylation landscapes: provocative insights from epigenomics
- (2008) Miho M. Suzuki et al. NATURE REVIEWS GENETICS
- Mutations in SUPPRESSOR OF VARIEGATION1, a Factor Required for Normal Chloroplast Translation, Suppress var2-Mediated Leaf Variegation in Arabidopsis
- (2008) F. Yu et al. PLANT CELL
- MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor
- (2008) S. Zhong et al. PLANT CELL
- A Polyadenylation Factor Subunit Implicated in Regulating Oxidative Signaling in Arabidopsis thaliana
- (2008) Jingxian Zhang et al. PLoS One
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started