Short and long reads chloroplast genome assemblies and phylogenomics of Artemisia tangutica (Asteraceae)
出版年份 2022 全文链接
标题
Short and long reads chloroplast genome assemblies and phylogenomics of Artemisia tangutica (Asteraceae)
作者
关键词
-
出版物
BIOLOGIA
Volume 77, Issue 4, Pages 915-930
出版商
Springer Science and Business Media LLC
发表日期
2022-03-15
DOI
10.1007/s11756-021-00951-2
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- The draft nuclear genome assembly of Eucalyptus pauciflora: a pipeline for comparing de novo assemblies
- (2020) Weiwen Wang et al. GigaScience
- Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia: insights into evolutionary divergence and phylogenomic implications
- (2020) Goon-Bo Kim et al. BMC GENOMICS
- Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid genes
- (2020) Xu Zhang et al. BMC PLANT BIOLOGY
- Chloroplast genome sequences of Artemisia maritima and Artemisia absinthium: Comparative analyses, mutational hotspots in genus Artemisia and phylogeny in family Asteraceae
- (2019) Iram Shahzadi et al. GENOMICS
- The chemistry and pharmacology of alkaloids and allied nitrogen compounds from Artemisia species: A review
- (2019) Mamoon Ur Rashid et al. PHYTOTHERAPY RESEARCH
- The complete chloroplast genome of the Jerusalem artichoke (Helianthus tuberosus L.) and an adaptive evolutionary analysis of the ycf2 gene
- (2019) Qiwen Zhong et al. PeerJ
- PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
- (2019) Dong Zhang et al. Molecular Ecology Resources
- Molecular phylogeny of Artemisia (Asteraceae-Anthemideae) with emphasis on undescribed taxa from Gilgit-Baltistan (Pakistan) based on nrDNA (ITS and ETS) and cpDNA (psbA-trnH) sequences
- (2019) Adil Hussain et al. Plant Ecology and Evolution
- Chloroplast Genome Sequence of Artemisia scoparia: Comparative Analyses and Screening of Mutational Hotspots
- (2019) Shabina Iram et al. Plants-Basel
- Huganpian, a traditional chinese medicine, inhibits liver cancer growth in vitro and in vivo by inducing autophagy and cell cycle arrest
- (2019) Xue Gao et al. BIOMEDICINE & PHARMACOTHERAPY
- IRscope: an online program to visualize the junction sites of chloroplast genomes
- (2018) Ali Amiryousefi et al. BIOINFORMATICS
- A phylogenetic road map to antimalarial Artemisia species
- (2018) Jaume Pellicer et al. JOURNAL OF ETHNOPHARMACOLOGY
- Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
- (2018) Weiwen Wang et al. BMC GENOMICS
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
- (2017) Chuan-Le Xiao et al. NATURE METHODS
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- GeSeq – versatile and accurate annotation of organelle genomes
- (2017) Michael Tillich et al. NUCLEIC ACIDS RESEARCH
- Phylogeny and biogeography of Artemisia subgenus Seriphidium (Asteraceae: Anthemideae)
- (2017) Sadia Malik et al. TAXON
- Taxonomic status and phylogenetic position of Phaeostigma in the subtribe Artemisiinae (Asteraceae)
- (2017) Yuan Huang et al. Journal of Systematics and Evolution
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
- (2017) Benjamin Istace et al. GigaScience
- De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms
- (2017) Francesca Giordano et al. Scientific Reports
- Chemical composition of volatile organic compounds of Artemisia vulgaris L. (Asteraceae) from the Qinghai–Tibet Plateau
- (2016) Svetlana Vasylievna Zhigzhitzhapova et al. INDUSTRIAL CROPS AND PRODUCTS
- Anti-Inflammatory Effects ofArtemisiaLeaf Extract in Mice with Contact DermatitisIn VitroandIn Vivo
- (2016) Chanyong Yun et al. MEDIATORS OF INFLAMMATION
- NOVOPlasty:de novoassembly of organelle genomes from whole genome data
- (2016) Nicolas Dierckxsens et al. NUCLEIC ACIDS RESEARCH
- tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes
- (2016) Todd M. Lowe et al. NUCLEIC ACIDS RESEARCH
- The complete chloroplast genome sequence and phylogenetic analysis of Chuanminshen (Chuanminshenviolaceum Sheh et Shan)
- (2016) Can Yuan et al. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS
- Benchmarking of the Oxford Nanopore MinION sequencing for quantitative and qualitative assessment of cDNA populations
- (2016) Spyros Oikonomopoulos et al. Scientific Reports
- Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus
- (2015) Peng-Fei Ma et al. Scientific Reports
- De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping
- (2015) Remi-Andre Olsen et al. GigaScience
- Translational selection in human: more pronounced in housekeeping genes
- (2014) Lina Ma et al. Biology Direct
- A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs
- (2014) Wenpan Dong et al. BMC GENETICS
- Chemical composition of the essential oil of Artemisia hedinii Ostenf. et Pauls. from the Qinghai-Tibetan Plateau
- (2014) S.V. Zhigzhitzhapova et al. INDUSTRIAL CROPS AND PRODUCTS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Evaluation ofIn VitroAntimalarial Activity of Different Extracts ofArtemisia aucheriBoiss. andA. armeniacaLam. and Fractions of the Most Potent Extracts
- (2014) Mahdi Mojarrab et al. TheScientificWorldJOURNAL
- Life cycle versus systematic placement: phylogenetic and cytogenetic studies in annual Artemisia (Asteraceae, Anthemideae)
- (2014) Jaume PELLICER et al. TURKISH JOURNAL OF BOTANY
- Asian origin and upslope migration of HawaiianArtemisia(Compositae-Anthemideae)
- (2013) Christopher R. Hobbs et al. JOURNAL OF BIOGEOGRAPHY
- Multitargeted inhibition of hepatic fibrosis in chronic iron-overloaded mice by Salvia miltiorrhiza
- (2013) Ying Zhang et al. JOURNAL OF ETHNOPHARMACOLOGY
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants
- (2013) Yue Liu et al. PLoS One
- Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications
- (2013) Rong Li et al. PLoS One
- Codon usage bias: causative factors, quantification methods and genome-wide patterns: with emphasis on insect genomes
- (2012) Susanta K. Behura et al. BIOLOGICAL REVIEWS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Loss of the Acetyl-CoA Carboxylase (accD) Gene in Poales
- (2012) Mark E. Harris et al. PLANT MOLECULAR BIOLOGY REPORTER
- Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)
- (2012) Xiaojun Nie et al. PLoS One
- Phylogenetic analysis of different Artemisia species based on chloroplast gene rps11
- (2011) Tariq Mahmood et al. Archives of Biological Sciences
- Primer development for the plastid region ycf1 in Annonaceae and other magnoliids
- (2010) Kurt M. Neubig et al. AMERICAN JOURNAL OF BOTANY
- Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae
- (2010) Mary M. Guisinger et al. JOURNAL OF MOLECULAR EVOLUTION
- The GenusArtemisia: A Comprehensive Review
- (2010) Kundan Singh Bora et al. PHARMACEUTICAL BIOLOGY
- Identification of Nuclear Genes Encoding Chloroplast-Localized Proteins Required for Embryo Development in Arabidopsis
- (2010) N. Bryant et al. PLANT PHYSIOLOGY
- Molecular evolution and phylogeny of the angiosperm ycf2 gene
- (2010) Jin-Ling HUANG et al. Journal of Systematics and Evolution
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes
- (2009) Lei Gao et al. BMC EVOLUTIONARY BIOLOGY
- The Complete Chloroplast Genome of Coix lacryma-jobi and a Comparative Molecular Evolutionary Analysis of Plastomes in Cereals
- (2009) Charles H. Leseberg et al. JOURNAL OF MOLECULAR EVOLUTION
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started