Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus

Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis

(2015) William P Wysocki et al.   BMC EVOLUTIONARY BIOLOGY

Biogeography and phylogenomics of New World Bambusoideae (Poaceae), revisited

(2014) Sean V. Burke et al.   AMERICAN JOURNAL OF BOTANY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

History of Plastid DNA Insertions Reveals Weak Deletion and AT Mutation Biases in Angiosperm Mitochondrial Genomes

(2014) Daniel B. Sloan et al.   Genome Biology and Evolution

A trnI_CAU Triplication Event in the Complete Chloroplast Genome of Paris verticillata M.Bieb. (Melanthiaceae, Liliales)

(2014) Hoang Dang Khoa Do et al.   Genome Biology and Evolution

A molecular phylogeny of Raddia and its allies within the tribe Olyreae (Poaceae, Bambusoideae) based on noncoding plastid and nuclear spacers

(2014) Reyjane P. Oliveira et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mitochondrion-to-plastid DNA transfer: it happens

(2014) David Roy Smith   NEW PHYTOLOGIST

Transfer of noncoding DNA drives regulatory rewiring in bacteria

(2014) Yaara Oren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns

(2014) F.-W. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae)

(2014) Peng-Fei Ma et al.   SYSTEMATIC BIOLOGY

The “fossilized” mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate

(2013) Aaron O Richardson et al.   BMC BIOLOGY

Patterns of Genomic Integration of Nuclear Chloroplast DNA Fragments in Plant Species

(2013) T. Yoshida et al.   DNA RESEARCH

Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)

(2013) Shannon C.K. Straub et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative studies on species identification of Noctuoidea moths in two nature reserve conservation zones (Beijing, China) using DNA barcodes and thin-film biosensor chips

(2013) F. Yang et al.   Molecular Ecology Resources

Higher level phylogenetic relationships within the bamboos (Poaceae: Bambusoideae) based on five plastid markers

(2013) Scot A. Kelchner   MOLECULAR PHYLOGENETICS AND EVOLUTION

De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome

(2012) Massimo Iorizzo et al.   BMC PLANT BIOLOGY

The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction

(2012) Ching-Ping Lin et al.   Genome Biology and Evolution

Rapid Sequencing of the Bamboo Mitochondrial Genome Using Illumina Technology and Parallel Episodic Evolution of Organelle Genomes in Grasses

(2012) Peng-Fei Ma et al.   PLoS One

Extending the Limited Transfer Window Hypothesis to Inter-organelle DNA Migration

(2011) David Roy Smith   Genome Biology and Evolution

Correlation between Nuclear Plastid DNA Abundance and Plastid Number Supports the Limited Transfer Window Hypothesis

(2011) David Roy Smith et al.   Genome Biology and Evolution

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

(2011) Yun-Jie Zhang et al.   PLoS One

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes

(2011) Todd J. Treangen et al.   PLoS Genetics

Migration of endpoints of two genes relative to boundaries between regions of the plastid genome in the grass family (Poaceae)

(2010) Jerrold I. Davis et al.   AMERICAN JOURNAL OF BOTANY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Complete Chloroplast Genome Sequence of a Major Allogamous Forage Species, Perennial Ryegrass (Lolium perenne L.)

(2009) K. Diekmann et al.   DNA RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

The give-and-take of DNA: horizontal gene transfer in plants

(2009) Ralph Bock   TRENDS IN PLANT SCIENCE

DNA Transfer from Organelles to the Nucleus: The Idiosyncratic Genetics of Endosymbiosis

(2008) Tatjana Kleine et al.   Annual Review of Plant Biology

Mitochondrial DNA of Vitis vinifera and the Issue of Rampant Horizontal Gene Transfer

(2008) V. V. Goremykin et al.   MOLECULAR BIOLOGY AND EVOLUTION