NOVOPlasty:de novoassembly of organelle genomes from whole genome data

A network-based approach to identify substrate classes of bacterial glycosyltransferases

(2014) Aminael Sánchez-Rodríguez et al.   BMC GENOMICS

Direct Chloroplast Sequencing: Comparison of Sequencing Platforms and Analysis Tools for Whole Chloroplast Barcoding

(2014) Marta Brozynska et al.   PLoS One

Echinochloa Chloroplast Genomes: Insights into the Evolution and Taxonomic Identification of Two Weedy Species

(2014) Chu-Yu Ye et al.   PLoS One

De novo assembly of the complete organelle genome sequences of azuki bean (Vigna angularis) using next-generation sequencers

(2013) Ken Naito et al.   BREEDING SCIENCE

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Characterizing and measuring bias in sequence data

(2013) Michael G Ross et al.   GENOME BIOLOGY

Capturing chloroplast variation for molecular ecology studies: a simple next generation sequencing approach applied to a rainforest tree

(2013) Hannah McPherson et al.   BMC ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Sequencing of Chloroplast Genome Using Whole Cellular DNA and Solexa Sequencing Technology

(2012) Jian Wu et al.   Frontiers in Plant Science

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

The NCBI Taxonomy database

(2011) S. Federhen   NUCLEIC ACIDS RESEARCH

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

(2010) A. J. Alverson et al.   MOLECULAR BIOLOGY AND EVOLUTION