Codon usage bias: causative factors, quantification methods and genome-wide patterns: with emphasis on insect genomes

Genome-wide comparative analysis of simple sequence coding repeats among 25 insect species

(2012) Susanta K. Behura et al.   GENE

Translational selection of genes coding for perfectly conserved proteins among three mosquito vectors

(2012) Olaf Rodriguez et al.   INFECTION GENETICS AND EVOLUTION

Intrinsic features of Aedes aegypti genes affect transcriptional responsiveness of mosquito genes to dengue virus infection

(2012) Susanta K. Behura et al.   INFECTION GENETICS AND EVOLUTION

Comparative Analysis of Codon Usage Bias and Codon Context Patterns between Dipteran and Hymenopteran Sequenced Genomes

(2012) Susanta K. Behura et al.   PLoS One

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Creating a Buzz About Insect Genomes

(2011) G. E. Robinson et al.   SCIENCE

A Role for Codon Order in Translation Dynamics

(2010) Gina Cannarozzi et al.   CELL

Coadaptation of isoacceptor tRNA genes and codon usage bias for translation efficiency in Aedes aegypti and Anopheles gambiae

(2010) S. K. Behura et al.   INSECT MOLECULAR BIOLOGY

Comparative analysis of nuclear tRNA genes ofNasonia vitripennisand other arthropods, and relationships to codon usage bias

(2010) S. K. Behura et al.   INSECT MOLECULAR BIOLOGY

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Forces that influence the evolution of codon bias

(2010) P. M. Sharp et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics

(2010) P. Arensburger et al.   SCIENCE

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Codon usage is associated with the evolutionary age of genes in metazoan genomes

(2009) Yosef Prat et al.   BMC EVOLUTIONARY BIOLOGY

Origin and evolution of the genetic code: The universal enigma

(2009) Eugene V. Koonin et al.   IUBMB LIFE

Toward Engineering Synthetic Microbial Metabolism

(2009) George H. McArthur et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Categorizing Host-Dependent RNA Viruses by Principal Component Analysis of Their Codon Usage Preferences

(2009) Ming-Wei Su et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)

(2008) Pere Puigbò et al.   BMC BIOINFORMATICS

Preferred and avoided codon pairs in three domains of life

(2008) Age Tats et al.   BMC GENOMICS

Incorporating PCA and fuzzy-ART techniques into achieve organism classification based on codon usage consideration

(2008) Kun-Lin Hsieh et al.   COMPUTERS IN BIOLOGY AND MEDICINE

SCUMBLE: a method for systematic and accurate detection of codon usage bias by maximum likelihood estimation

(2008) Morten Kloster et al.   NUCLEIC ACIDS RESEARCH

Virus Attenuation by Genome-Scale Changes in Codon Pair Bias

(2008) J. R. Coleman et al.   SCIENCE

Amino acid and codon usage profiles: Adaptive changes in the frequency of amino acids and codons

(2007) Hani Goodarzi et al.   GENE