ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
出版年份 2022 全文链接
标题
ResFinder – an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
作者
关键词
-
出版物
Microbial Genomics
Volume 8, Issue 1, Pages -
出版商
Microbiology Society
发表日期
2022-01-24
DOI
10.1099/mgen.0.000748
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Predicting Antimicrobial Resistance Using Partial Genome Alignments
- (2021) D. Aytan-Aktug et al. mSystems
- Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks
- (2020) D. Aytan-Aktug et al. mSystems
- ResFinder 4.0 for predictions of phenotypes from genotypes
- (2020) Valeria Bortolaia et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- CRHP Finder, a webtool for the detection of clarithromycin resistance in Helicobacter pylori from whole‐genome sequencing data
- (2020) Melodi Yusibova et al. HELICOBACTER
- Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning
- (2020) Bálint Ármin Pataki et al. Scientific Reports
- Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania
- (2019) Happiness H Kumburu et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences
- (2019) Henrik Hasman et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Using Genomics to Track Global Antimicrobial Resistance
- (2019) Rene S. Hendriksen et al. Frontiers in Public Health
- Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites
- (2019) Camilla Hundahl Johnsen et al. Frontiers in Microbiology
- Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae
- (2018) Marcus Nguyen et al. Scientific Reports
- SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data
- (2018) Hülya Kaya et al. mSphere
- Rapid and precise alignment of raw reads against redundant databases with KMA
- (2018) Philip T. L. C. Clausen et al. BMC BIOINFORMATICS
- Proficiency of WHO Global Foodborne Infections Network External Quality Assurance System participants in the identification and susceptibility testing of thermo-tolerant Campylobacter spp. from 2003-2012.
- (2018) Susanne Karlsmose Pedersen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal Salmonella
- (2018) Marcus Nguyen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance
- (2018) Erol S. Kavvas et al. Nature Communications
- PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
- (2017) Ea Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella
- (2016) Patrick F. McDermott et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data
- (2016) Philip T. L. C. Clausen et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Sharing Data for Global Infectious Disease Surveillance and Outbreak Detection
- (2016) Frank M. Aarestrup et al. TRENDS IN MICROBIOLOGY
- Whole-Genome Sequencing Analysis Accurately Predicts Antimicrobial Resistance Phenotypes in Campylobacter spp.
- (2015) S. Zhao et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- WGS accurately predicts antimicrobial resistance inEscherichia coli
- (2015) Gregory H. Tyson et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Benchmarking of Methods for Genomic Taxonomy
- (2014) M. V. Larsen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms
- (2014) Rolf S. Kaas et al. PLoS One
- SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
- (2014) Michael Inouye et al. Genome Medicine
- The Comprehensive Antibiotic Resistance Database
- (2013) Andrew G. McArthur et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
- (2013) N. Stoesser et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
- (2012) M. V. Larsen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Global Monitoring of Salmonella Serovar Distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: Results of Quality Assured Laboratories from 2001 to 2007
- (2011) Rene S. Hendriksen et al. Foodborne Pathogens and Disease
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Results of Use of WHO Global Salm-Surv External Quality Assurance System for Antimicrobial Susceptibility Testing of Salmonella Isolates from 2000 to 2007
- (2008) R. S. Hendriksen et al. JOURNAL OF CLINICAL MICROBIOLOGY
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