Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites

Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis

(2018) Francesc Coll et al.   NATURE GENETICS

Rapid and precise alignment of raw reads against redundant databases with KMA

(2018) Philip T. L. C. Clausen et al.   BMC BIOINFORMATICS

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing

(2018)   NEW ENGLAND JOURNAL OF MEDICINE

PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

(2017) Ea Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Mycobacterium tuberculosis resistance prediction and lineage classification from genome sequencing: comparison of automated analysis tools

(2017) Viola Schleusener et al.   Scientific Reports

Description of compensatorygyrAmutations restoring fluoroquinolone susceptibility inMycobacterium tuberculosis

(2016) Alix Pantel et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Collaborative Effort for a Centralized Worldwide Tuberculosis Relational Sequencing Data Platform: Figure 1.

(2015) Angela M. Starks et al.   CLINICAL INFECTIOUS DISEASES

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

(2015) Silke Feuerriegel et al.   JOURNAL OF CLINICAL MICROBIOLOGY

CASTB (the comprehensive analysis server for the Mycobacterium tuberculosis  complex): A publicly accessible web server for epidemiological analyses, drug-resistance prediction and phylogenetic comparison of clinical isolates

(2015) Hiroki Iwai et al.   TUBERCULOSIS

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis

(2015) Phelim Bradley et al.   Nature Communications

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences

(2015) Francesc Coll et al.   Genome Medicine

Pantothenate and Pantetheine Antagonize the Antitubercular Activity of Pyrazinamide

(2014) Nicholas A. Dillon et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes

(2014) Andreas Steiner et al.   BMC GENOMICS

Whole-genome sequencing to control antimicrobial resistance

(2014) Claudio U. Köser et al.   TRENDS IN GENETICS

Analysis of Mutations in Streptomycin-Resistant Strains Reveals a Simple and Reliable Genetic Marker for Identification of the Mycobacterium tuberculosis Beijing Genotype

(2013) C. Villellas et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Rifampin Resistance Missed in Automated Liquid Culture System for Mycobacterium tuberculosis Isolates with Specific rpoB Mutations

(2013) L. Rigouts et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Thr270Ile inembC(Rv3793) Is Not a Marker for Ethambutol Resistance in theMycobacterium tuberculosisComplex

(2011) Claudio U. Köser et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Mutations ingidBConfer Low-Level Streptomycin Resistance in Mycobacterium tuberculosis

(2011) Sharon Y. Wong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Molecular Detection of Mutations Associated with First- and Second-Line Drug Resistance Compared with Conventional Drug Susceptibility Testing of Mycobacterium tuberculosis

(2011) Patricia J. Campbell et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Molecular basis and mechanisms of drug resistance in Mycobacterium tuberculosis: classical and new drugs

(2011) P. E. Almeida Da Silva et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

High Level of Cross-Resistance between Kanamycin, Amikacin, and Capreomycin among Mycobacterium tuberculosis Isolates from Georgia and a Close Relation with Mutations in the rrs Gene

(2009) L. Jugheli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Arabinosyltransferase EmbC Is Inhibited by Ethambutol in Mycobacterium tuberculosis

(2009) R. Goude et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Polymorphisms Associated with Resistance and Cross-Resistance to Aminoglycosides and Capreomycin in Mycobacterium tuberculosis Isolates from South Korean Patients with Drug-Resistant Tuberculosis

(2009) L. E. Via et al.   JOURNAL OF CLINICAL MICROBIOLOGY