WGS accurately predicts antimicrobial resistance inEscherichia coli

Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing

(2014) N. C. Gordon et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A high throughput multiplex PCR assay for simultaneous detection of seven aminoglycoside-resistance genes in Enterobacteriaceae

(2013) Xiumei Hu et al.   BMC MICROBIOLOGY

Background and Rationale for Revised Clinical and Laboratory Standards Institute Interpretive Criteria (Breakpoints) for Enterobacteriaceae andPseudomonas aeruginosa:I. Cephalosporins and Aztreonam

(2013) Michael N. Dudley et al.   CLINICAL INFECTIOUS DISEASES

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data

(2013) N. Stoesser et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multidrug resistance-encoding plasmid from Aeromonas sp. strain P2GI

(2012) E. Marti et al.   CLINICAL MICROBIOLOGY AND INFECTION

qnr, aac(6′)-Ib-cr and qepA genes in Escherichia coli and Klebsiella spp.: genetic environments and plasmid and chromosomal location

(2012) Elena Ruiz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Transforming clinical microbiology with bacterial genome sequencing

(2012) Xavier Didelot et al.   NATURE REVIEWS GENETICS

Genotypic-Phenotypic Discrepancies between Antibiotic Resistance Characteristics of Escherichia coli Isolates from Calves in Management Settings with High and Low Antibiotic Use

(2011) Margaret A. Davis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A multiplex real-time PCR assay targeting virulence and resistance genes in Salmonella enterica serotype Typhimurium

(2011) Marie Bugarel et al.   BMC MICROBIOLOGY

Plasmid-Mediated Resistance in Enterobacteriaceae

(2011) Constance Schultsz et al.   DRUGS

Establishing Streptomycin Epidemiological Cut-Off Values for Salmonella and Escherichia coli

(2011) Lourdes Garcia-Migura et al.   Microbial Drug Resistance

Reduced Azithromycin Susceptibility in Shigella sonnei, United States

(2010) Rebecca Leigh Howie et al.   Microbial Drug Resistance

Novel genetic environment of qnrB2 associated with TEM-1 and SHV-12 on pB1004, an IncHI2 plasmid, in Salmonella Bredeney BB1047 from Spain

(2009) Belén Gutierrez et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation

(2008) Samuel V. Angiuoli et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY