标题
Using Genomics to Track Global Antimicrobial Resistance
作者
关键词
-
出版物
Frontiers in Public Health
Volume 7, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2019-09-04
DOI
10.3389/fpubh.2019.00242
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Genetic Determinants and Prediction of Antibiotic Resistance Phenotypes in Helicobacter pylori
- (2019) Francis Lauener et al. Journal of Clinical Medicine
- Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
- (2019) Rene S. Hendriksen et al. Nature Communications
- Sequencing-based methods and resources to study antimicrobial resistance
- (2019) Manish Boolchandani et al. NATURE REVIEWS GENETICS
- LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences
- (2019) Henrik Hasman et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- All for one and one for all: the true potential of whole-genome sequencing
- (2019) Marc W Allard et al. LANCET INFECTIOUS DISEASES
- Indexed variation graphs for efficient and accurate resistome profiling
- (2018) Will P M Rowe et al. BIOINFORMATICS
- ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes
- (2018) Xiaole Yin et al. BIOINFORMATICS
- Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology
- (2018) J.W.A. Rossen et al. CLINICAL MICROBIOLOGY AND INFECTION
- Automated annotation of mobile antibiotic resistance in Gram-negative bacteria: the Multiple Antibiotic Resistance Annotator (MARA) and database
- (2018) Sally R Partridge et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Accuracy of different bioinformatics methods in detecting antibiotic resistance and virulence factors from Staphylococcus aureus whole genome sequences.
- (2018) Amy Mason et al. JOURNAL OF CLINICAL MICROBIOLOGY
- How ownership rights over microorganisms affect infectious disease control and innovation: A root-cause analysis of barriers to data sharing as experienced by key stakeholders
- (2018) Carolina dos S. Ribeiro et al. PLoS One
- Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae
- (2018) Marcus Nguyen et al. Scientific Reports
- Whole-genome sequencing based characterization of antimicrobial resistance in Enterococcus
- (2018) Gregory H Tyson et al. Pathogens and Disease
- In-depth resistome analysis by targeted metagenomics
- (2018) Val F. Lanza et al. Microbiome
- A reservoir of ‘historical’ antibiotic resistance genes in remote pristine Antarctic soils
- (2018) Marc W. Van Goethem et al. Microbiome
- DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
- (2018) Gustavo Arango-Argoty et al. Microbiome
- Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
- (2018) Patrick Munk et al. Nature Microbiology
- SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data
- (2018) Hülya Kaya et al. mSphere
- Rapid and precise alignment of raw reads against redundant databases with KMA
- (2018) Philip T. L. C. Clausen et al. BMC BIOINFORMATICS
- Proficiency of WHO Global Foodborne Infections Network External Quality Assurance System participants in the identification and susceptibility testing of thermo-tolerant Campylobacter spp. from 2003-2012.
- (2018) Susanne Karlsmose Pedersen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing
- (2018) NEW ENGLAND JOURNAL OF MEDICINE
- ARGDIT: a validation and integration toolkit for Antimicrobial Resistance Gene Databases
- (2018) Jimmy Ka Ho Chiu et al. BIOINFORMATICS
- The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries
- (2018) Liese Van Gompel et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Genome-based prediction of bacterial antibiotic resistance
- (2018) Michelle Su et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal Salmonella
- (2018) Marcus Nguyen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Threats to timely sharing of pathogen sequence data
- (2018) Carolina dos S. Ribeiro et al. SCIENCE
- Prediction of the intestinal resistome by a three-dimensional structure-based method
- (2018) Etienne Ruppé et al. Nature Microbiology
- National Antimicrobial Resistance Monitoring System: Two Decades of Advancing Public Health Through Integrated Surveillance of Antimicrobial Resistance
- (2017) Beth E. Karp et al. Foodborne Pathogens and Disease
- PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
- (2017) Ea Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- WGS to predict antibiotic MICs for Neisseria gonorrhoeae
- (2017) David W. Eyre et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Beta-lactamase database (BLDB) – structure and function
- (2017) Thierry Naas et al. JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY
- Virus genomes reveal factors that spread and sustained the Ebola epidemic
- (2017) Gytis Dudas et al. NATURE
- Next-generation sequencing to monitor the spread of antimicrobial resistance
- (2017) Michael Otto Genome Medicine
- Antimicrobial resistance surveillance in the genomic age
- (2016) Andrew G. McArthur et al. Annals of the New York Academy of Sciences
- Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella
- (2016) Patrick F. McDermott et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data
- (2016) Philip T. L. C. Clausen et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds
- (2016) Patrick Munk et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Consolidating and Exploring Antibiotic Resistance Gene Data Resources
- (2016) Basil Britto Xavier et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Interconnected microbiomes and resistomes in low-income human habitats
- (2016) Erica C. Pehrsson et al. NATURE
- MEGARes: an antimicrobial resistance database for high throughput sequencing
- (2016) Steven M. Lakin et al. NUCLEIC ACIDS RESEARCH
- Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
- (2016) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
- (2016) Baofeng Jia et al. NUCLEIC ACIDS RESEARCH
- Sharing Data for Global Infectious Disease Surveillance and Outbreak Detection
- (2016) Frank M. Aarestrup et al. TRENDS IN MICROBIOLOGY
- Genomic Epidemiology: Whole-Genome-Sequencing–Powered Surveillance and Outbreak Investigation of Foodborne Bacterial Pathogens
- (2016) Xiangyu Deng et al. Annual Review of Food Science and Technology
- SSTAR, a Stand-Alone Easy-To-Use Antimicrobial Resistance Gene Predictor
- (2016) Tom J. B. de Man et al. mSphere
- A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance
- (2016) Martin Christen Frølund Thomsen et al. PLoS One
- Whole-Genome Sequencing Analysis Accurately Predicts Antimicrobial Resistance Phenotypes in Campylobacter spp.
- (2015) S. Zhao et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- u-CARE: user-friendly Comprehensive Antibiotic resistance Repository ofEscherichia coli
- (2015) Saurav B Saha et al. JOURNAL OF CLINICAL PATHOLOGY
- Data sharing: Make outbreak research open access
- (2015) Nathan L. Yozwiak et al. NATURE
- NIH's genomic data sharing policy: timing and tradeoffs
- (2015) Jorge L. Contreras TRENDS IN GENETICS
- Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
- (2015) Phelim Bradley et al. Nature Communications
- High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
- (2015) James Kaminski et al. PLoS Computational Biology
- Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data
- (2015) Will Rowe et al. PLoS One
- Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance
- (2015) Thomas Nordahl Petersen et al. Scientific Reports
- MUBII-TB-DB: a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis
- (2014) Jean-Pierre Flandrois et al. BMC BIOINFORMATICS
- Attitudes of research participants and the general public towards genomic data sharing: a systematic literature review
- (2014) Mahsa Shabani et al. EXPERT REVIEW OF MOLECULAR DIAGNOSTICS
- Comparative Genomic Analysis and Virulence Differences in Closely Related Salmonella enterica Serotype Heidelberg Isolates from Humans, Retail Meats, and Animals
- (2014) Maria Hoffmann et al. Genome Biology and Evolution
- Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
- (2014) Molly K Gibson et al. ISME Journal
- Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing
- (2014) N. C. Gordon et al. JOURNAL OF CLINICAL MICROBIOLOGY
- CBMAR: a comprehensive β-lactamase molecular annotation resource
- (2014) Abhishikha Srivastava et al. Database-The Journal of Biological Databases and Curation
- SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
- (2014) Michael Inouye et al. Genome Medicine
- ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
- (2013) Sushim Kumar Gupta et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Recurrent epidemic cholera with high mortality in Cameroon: persistent challenges 40 years into the seventh pandemic
- (2013) E. J. CARTWRIGHT et al. EPIDEMIOLOGY AND INFECTION
- Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
- (2013) N. Stoesser et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions
- (2013) W. Florian Fricke et al. NATURE REVIEWS GENETICS
- BacMet: antibacterial biocide and metal resistance genes database
- (2013) Chandan Pal et al. NUCLEIC ACIDS RESEARCH
- Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Assuring the quality of next-generation sequencing in clinical laboratory practice
- (2012) Amy S Gargis et al. NATURE BIOTECHNOLOGY
- Transforming clinical microbiology with bacterial genome sequencing
- (2012) Xavier Didelot et al. NATURE REVIEWS GENETICS
- Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology
- (2012) Claudio U. Köser et al. PLoS Pathogens
- Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance
- (2011) A.-P. Magiorakos et al. CLINICAL MICROBIOLOGY AND INFECTION
- The impact of next-generation sequencing on genomics
- (2011) Jun Zhang et al. Journal of Genetics and Genomics
- INTEGRALL: a database and search engine for integrons, integrases and gene cassettes
- (2009) A. Moura et al. BIOINFORMATICS
- The Lactamase Engineering Database: a critical survey of TEM sequences in public databases
- (2009) Quan Thai et al. BMC GENOMICS
- Data sharing in genomics — re-shaping scientific practice
- (2009) Jane Kaye et al. NATURE REVIEWS GENETICS
- Tuberculosis Drug Resistance Mutation Database
- (2009) Andreas Sandgren et al. PLOS MEDICINE
- Results of Use of WHO Global Salm-Surv External Quality Assurance System for Antimicrobial Susceptibility Testing of Salmonella Isolates from 2000 to 2007
- (2008) R. S. Hendriksen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- ARDB--Antibiotic Resistance Genes Database
- (2008) B. Liu et al. NUCLEIC ACIDS RESEARCH
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