Integrated Analysis of Metabolome and Transcriptome Reveals Insights for Cold Tolerance in Rapeseed (Brassica napus L.)

Omics: The way forward to enhance abiotic stress tolerance in Brassica napus L.

(2021) Ali Raza et al.   GM Crops & Food-Biotechnology in Agriculture and the Food Chain

Study on the mechanism of exogenous serotonin improving cold tolerance of rapeseed (Brassica napus L.) seedlings

(2021) Huang He et al.   PLANT GROWTH REGULATION

Can omics deliver temperature resilient ready-to-grow crops?

(2021) Ali Raza et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Integrated analysis of transcriptomics and proteomics provides insights into the molecular regulation of cold response in Brassica napus

(2021) Sundas Saher Mehmood et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

STCH4/REIL2 Confers Cold Stress Tolerance in Arabidopsis by Promoting rRNA Processing and CBF Protein Translation

(2020) Hasi Yu et al.   Cell Reports

Metabolomic study reveals key metabolic adjustments in the xerohalophyte Salvadora persica L. during adaptation to water deficit and subsequent recovery conditions

(2020) Jaykumar Rangani et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Comparative metabolomics analysis of the response to cold stress of resistant and susceptible Tibetan hulless barley (Hordeum distichon)

(2020) Chunbao Yang et al.   PHYTOCHEMISTRY

Comparative metabolomic profiling in the roots of salt-tolerant and salt-intolerant maize cultivars treated with NaCl stress

(2020) J.Y. YUE et al.   BIOLOGIA PLANTARUM

Comparative transcriptome combined with metabolome analyses revealed key factors involved in nitric oxide (NO)-regulated cadmium stress adaptation in tall fescue

(2020) Huihui Zhu et al.   BMC GENOMICS

Eco-physiological and Biochemical Responses of Rapeseed (Brassica napus L.) to Abiotic Stresses: Consequences and Mitigation Strategies

(2020) Ali Raza   JOURNAL OF PLANT GROWTH REGULATION

Choline-mediated lipid reprogramming as a dominant salt tolerance mechanism in grass species lacking glycine betaine

(2020) Kun Zhang et al.   PLANT AND CELL PHYSIOLOGY

Metabolomics: a systems biology approach for enhancing heat stress tolerance in plants

(2020) Ali Raza   PLANT CELL REPORTS

Transcriptome and metabolome analyses of two contrasting sesame genotypes reveal the crucial biological pathways involved in rapid adaptive response to salt stress

(2019) Yujuan Zhang et al.   BMC PLANT BIOLOGY

Role of Glucose and 2-Oxoglutarate/Malate Translocator (OMT1) in the Production of Phenyllactic Acid and p-Hydroxyphenyllactic Acid, Two Food-Borne Pathogen Inhibitors

(2019) Ya Dao et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Seed Priming with Spermidine and Trehalose Enhances Chilling Tolerance of Rice via Different Mechanisms

(2019) Yuying Fu et al.   JOURNAL OF PLANT GROWTH REGULATION

Metabolic responses and their correlations with phytochelatins in Amaranthus hypochondriacus under cadmium stress

(2019) Mengdi Xie et al.   ENVIRONMENTAL POLLUTION

Overexpression of the wheat trehalose 6-phosphate synthase 11 gene enhances cold tolerance in Arabidopsis thaliana

(2019) Xin Liu et al.   GENE

Comparative metabolomics analysis reveals different metabolic responses to drought in tolerant and susceptible poplar species

(2019) Huixia Jia et al.   PHYSIOLOGIA PLANTARUM

Genome‐wide association study for frost tolerance in rapeseed/canola ( Brassica napus ) under simulating freezing conditions

(2019) Danielle F. Wrucke et al.   PLANT BREEDING

Integration of lipidomic and transcriptomic profiles reveals novel genes and regulatory mechanisms of Schizochytrium sp. in response to salt stress

(2019) Jia-Yi Jiang et al.   BIORESOURCE TECHNOLOGY

Comparative metabolomics and transcriptomics of pistils, stamens and pistilloid stamens widen key knowledge of pistil and stamen development in wheat.

(2019) Yan Yu et al.   Czech Journal of Genetics and Plant Breeding

H2O2 and NO are involved in trehalose-regulated oxidative stress tolerance in cold-stressed tomato plants

(2019) Tao Liu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Physiological and molecular responses to cold stress in rapeseed (Brassica napus L.)

(2019) Lei YAN et al.   Journal of Integrative Agriculture

Root proteomic and metabolic analyses reveal specific responses to drought stress in differently tolerant grapevine rootstocks

(2018) Bhakti Prinsi et al.   BMC PLANT BIOLOGY

Metabolomics: a high-throughput screen for biochemical and bioactivity diversity in plants and crops

(2018) Alexandre Foito et al.   CURRENT PHARMACEUTICAL DESIGN

Transcriptome and metabolome analyses provide insights into root and root-released organic anion responses to phosphorus deficiency in oat

(2018) Yanliang Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Responses of nonenzymatic antioxidants to atrazine in arbuscular mycorrhizal roots of Medicago sativa L.

(2018) Xiaoxu Fan et al.   MYCORRHIZA

UPLC-HRMS-based untargeted metabolic profiling reveals changes in chickpea (Cicer arietinum ) metabolome following long-term drought stress

(2018) Naeem Khan et al.   PLANT CELL AND ENVIRONMENT

Inheritance of 4-hydroxyphenylpyruvate dioxygenase inhibitor herbicide resistance in an Amaranthus tuberculatus population from Iowa, USA

(2018) Daniel R. Kohlhase et al.   PLANT SCIENCE

Molecular Regulation of CBF Signaling in Cold Acclimation

(2018) Yiting Shi et al.   TRENDS IN PLANT SCIENCE

Metabolome Integrated Analysis of High-Temperature Response in Pinus radiata

(2018) Mónica Escandón et al.   Frontiers in Plant Science

Involvement of auxin in the regulation of ammonium tolerance in rice (Oryza sativa L.)

(2018) Dong-Wei Di et al.   PLANT AND SOIL

Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes

(2018) Yin Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Local Auxin Biosynthesis Is a Key Regulator of Plant Development

(2018) Javier Brumos et al.   DEVELOPMENTAL CELL

RNA Chaperone Function of a Universal Stress Protein in Arabidopsis Confers Enhanced Cold Stress Tolerance in Plants

(2017) Sarah Mae Boyles Melencion et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

4-Hydroxyphenylpyruvate Dioxygenase Inhibitors: From Chemical Biology to Agrochemicals

(2017) Ferdinand Ndikuryayo et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Current understanding of the pathways of flavonoid biosynthesis in model and crop plants

(2017) Takayuki Tohge et al.   JOURNAL OF EXPERIMENTAL BOTANY

Recent advances in auxin research in rice and their implications for crop improvement

(2017) Yidong Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Organ-specific proteomics of soybean seedlings under flooding and drought stresses

(2017) Xin Wang et al.   Journal of Proteomics

A novel method for single-grain-based metabolic profiling of Arabidopsis seed

(2017) Yuji Sawada et al.   Metabolomics

Seed priming improves chilling tolerance in chickpea by modulating germination metabolism, trehalose accumulation and carbon assimilation

(2017) Muhammad Farooq et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Analyses of quality and metabolites levels of okra during postharvest senescence by 1 H-high resolution NMR

(2017) Juan Liu et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Identification of cold-stress responsive proteins in Anabasis aphylla seedlings via the iTRAQ proteomics technique

(2017) Tingting Wang et al.   Journal of Plant Interactions

Modeling Allometric Relationships in Leaves of Young Rapeseed (Brassica napus L.) Grown at Different Temperature Treatments

(2017) Tian Tian et al.   Frontiers in Plant Science

The Amino Acid Metabolic and Carbohydrate Metabolic Pathway Play Important Roles during Salt-Stress Response in Tomato

(2017) Zhi Zhang et al.   Frontiers in Plant Science

A Transcriptomic Comparison of Two Bambara Groundnut Landraces under Dehydration Stress

(2017) Faraz Khan et al.   Genes

Concentration Does Matter: The Beneficial and Potentially Harmful Effects of Ascorbate in Humans and Plants

(2017) Szilvia Z. Tóth et al.   ANTIOXIDANTS & REDOX SIGNALING

Thecbfstriple mutants reveal the essential functions ofCBFsin cold acclimation and allow the definition of CBF regulons inArabidopsis

(2016) Yuxin Jia et al.   NEW PHYTOLOGIST

The Starch Granule-Associated Protein EARLY STARVATION1 Is Required for the Control of Starch Degradation inArabidopsis thalianaLeaves

(2016) Doreen Feike et al.   PLANT CELL

Cyclic AMP deficiency negatively affects cell growth and enhances stress-related responses in tobacco Bright Yellow-2 cells

(2016) Wilma Sabetta et al.   PLANT MOLECULAR BIOLOGY

Role of sugars under abiotic stress

(2016) Fareen Sami et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Acylcarnitines participate in developmental processes associated to lipid metabolism in plants

(2016) Phuong-Jean Nguyen et al.   PLANTA

Transcriptomic and Metabolomic Studies Disclose Key Metabolism Pathways Contributing to Well-maintained Photosynthesis under the Drought and the Consequent Drought-Tolerance in Rice

(2016) Xiaosong Ma et al.   Frontiers in Plant Science

Genetic Determinants for Pyomelanin Production and Its Protective Effect against Oxidative Stress in Ralstonia solanacearum

(2016) Shabir Ahmad et al.   PLoS One

Global metabolomic responses of Nitrosomonas europaea 19718 to cold stress and altered ammonia feeding patterns

(2015) Huijie Lu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative transcriptomics analysis reveals difference of key gene expression between banana and plantain in response to cold stress

(2015) Qiao-Song Yang et al.   BMC GENOMICS

β-Glucosidases: Multitasking, moonlighting or simply misunderstood?

(2015) James R. Ketudat Cairns et al.   PLANT SCIENCE

Transcriptomic Analysis Reveals Differential Gene Expressions for Cell Growth and Functional Secondary Metabolites in Induced Autotetraploid of Chinese Woad (Isatis indigotica Fort.)

(2015) Yingying Zhou et al.   PLoS One

Selection of reference genes for quantitative reverse-transcription polymerase chain reaction normalization in Brassica napus under various stress conditions

(2014) Zheng Wang et al.   MOLECULAR GENETICS AND GENOMICS

Metabolic response of maize (Zea mays L.) plants to combined drought and salt stress

(2014) Caixia Sun et al.   PLANT AND SOIL

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

Quantitative trait loci that control the oil content variation of rapeseed (Brassica napus L.)

(2014) Congcong Jiang et al.   THEORETICAL AND APPLIED GENETICS

Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics

(2014) Chaoyang Hu et al.   Scientific Reports

Aspartate aminotransferase: An old dog teaches new tricks

(2013) Michael D. Toney   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Quaternary ammonium compounds can be abundant in some soils and are taken up as intact molecules by plants

(2013) Charles R. Warren   NEW PHYTOLOGIST

Role and significance of beta-glucosidases in the hydrolysis of cellulose for bioethanol production

(2012) Reeta Rani Singhania et al.   BIORESOURCE TECHNOLOGY

DREB1/CBF transcription factors: their structure, function and role in abiotic stress tolerance in plants

(2012) M. AKHTAR et al.   JOURNAL OF GENETICS

Regulation of metabolomics in Atriplex halimus growth under salt and drought stress

(2012) Mamdouh M. Nemat Alla et al.   PLANT GROWTH REGULATION

Metabolic and Phenotypic Responses of Greenhouse-Grown Maize Hybrids to Experimentally Controlled Drought Stress

(2011) Sandra Witt et al.   Molecular Plant

The effect of carnitine on Arabidopsis development and recovery in salt stress conditions

(2011) Aurélie Charrier et al.   PLANTA

The Plastidial Glyceraldehyde-3-Phosphate Dehydrogenase Is Critical for Viable Pollen Development in Arabidopsis

(2010) J. Munoz-Bertomeu et al.   PLANT PHYSIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Analysis of the metabolome and transcriptome of Brassica carinata seedlings after lithium chloride exposure

(2009) Xiang Li et al.   PLANT SCIENCE

What is principal component analysis?

(2008) Markus Ringnér   NATURE BIOTECHNOLOGY