Diversity of the Bacterial Microbiome Associated With the Endosphere and Rhizosphere of Different Cassava (Manihot esculenta Crantz) Genotypes

Seasonal Nutrient Cycling and Enrichment of Nutrient-Related Soil Microbes Aid in the Adaptation of Ramie (Boehmeria nivea L.) to Nutrient-Deficient Conditions

(2021) Shenglan Wu et al.   Frontiers in Plant Science

Root microbiota assembly and adaptive differentiation among European Arabidopsis populations

(2020) Thorsten Thiergart et al.   Nature Ecology & Evolution

Revealing the Variation and Stability of Bacterial Communities in Tomato Rhizosphere Microbiota

(2020) Zhiqiang Cheng et al.   Microorganisms

Influence of plant genotype and soil on the wheat rhizosphere microbiome: evidences for a core microbiome across eight African and European soils

(2020) Marie Simonin et al.   FEMS MICROBIOLOGY ECOLOGY

Endophytic bacterial and fungal microbiota in different cultivars of cassava (Manihot esculenta Crantz)

(2020) Hong Li et al.   JOURNAL OF MICROBIOLOGY

Host selection shapes crop microbiome assembly and network complexity

(2020) Chao Xiong et al.   NEW PHYTOLOGIST

Microbiome‐wide association studies reveal correlations between the structure and metabolism of the rhizosphere microbiome and disease resistance in cassava

(2020) Lin Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

Deep eutectic solvent-based ultrasonic-assisted extraction of phenolic compounds from Moringa oleifera L. leaves: Optimization, comparison and antioxidant activity

(2020) Lingfeng Wu et al.   SEPARATION AND PURIFICATION TECHNOLOGY

Deciphering the relative importance of soil and plant traits on the development of rhizosphere microbial communities

(2020) Liangliang Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rapid Transfer of Plant Photosynthates to Soil Bacteria via Ectomycorrhizal Hyphae and Its Interaction With Nitrogen Availability

(2019) Stefan Gorka et al.   Frontiers in Microbiology

New frontiers in agriculture productivity: Optimised microbial inoculants and in situ microbiome engineering

(2019) Zhiguang Qiu et al.   BIOTECHNOLOGY ADVANCES

Plant intraspecific variation modulates nutrient cycling through its below ground rhizospheric microbiome

(2019) Leticia Pérez‐Izquierdo et al.   JOURNAL OF ECOLOGY

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

(2019) Jingying Zhang et al.   NATURE BIOTECHNOLOGY

The stereoisomeric Bacillus subtilis HN09 metabolite 3,4-dihydroxy-3-methyl-2-pentanone induces disease resistance in Arabidopsis via different signalling pathways

(2019) Niu Liu et al.   BMC PLANT BIOLOGY

Fusaricidin Produced by Paenibacillus polymyxa WLY78 Induces Systemic Resistance against Fusarium Wilt of Cucumber

(2019) Yunlong Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection

(2019) Norma M. Morella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct impacts of reductive soil disinfestation and chemical soil disinfestation on soil fungal communities and memberships

(2018) Jun Zhao et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits

(2018) Jonathan W. Leff et al.   ISME Journal

Diversity of cultivable bacterial endophytes in Paullinia cupana and their potential for plant growth promotion and phytopathogen control

(2018) Rhavena Graziela Liotti et al.   MICROBIOLOGICAL RESEARCH

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of Paenibacillus polymyxa inoculation on below-ground nematode communities and plant growth

(2018) Elizabeth A. Finch et al.   SOIL BIOLOGY & BIOCHEMISTRY

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Diversity of the Bacterial Microbiome in the Roots of Four Saccharum Species: S. spontaneum, S. robustum, S. barberi, and S. officinarum

(2018) Meng Dong et al.   Frontiers in Microbiology

Apple endophytic microbiota of different rootstock/scion combinations suggests a genotype-specific influence

(2018) Jia Liu et al.   Microbiome

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Plant host habitat and root exudates shape fungal diversity

(2018) Mylène Hugoni et al.   MYCORRHIZA

Root exudates drive the soil-borne legacy of aboveground pathogen infection

(2018) Jun Yuan et al.   Microbiome

Microbial Endophytes that Live within the Seeds of Two Tomato Hybrids Cultivated in Argentina

(2018) Silvina López et al.   Agronomy-Basel

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Stem inoculation with bacterial strains Bacillus amyloliquefaciens (GB03) and Microbacterium imperiale (MAIIF2a) mitigates Fusarium root rot in cassava

(2018) Monica A. Freitas et al.   PHYTOPARASITICA

Fungal Endophytic Communities of Two Wild Rosa Varieties With Different Powdery Mildew Susceptibilities

(2018) Yi Zhao et al.   Frontiers in Microbiology

Molecular assessment of the bacterial community associated with Cassava ( Manihot esculenta Crantz) cultivation in Cameroon

(2017) Papa Saliou Sarr et al.   MICROBIOLOGICAL RESEARCH

Identification of Root-Secreted Compounds Involved in the Communication Between Cucumber, the Beneficial Bacillus amyloliquefaciens, and the Soil-Borne Pathogen Fusarium oxysporum

(2017) Yunpeng Liu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

(2017) Francis M. Martin et al.   SCIENCE

Probiotic Pseudomonas communities enhance plant growth and nutrient assimilation via diversity-mediated ecosystem functioning

(2017) Jie Hu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Lineage overwhelms environmental conditions in determining rhizosphere bacterial community structure in a cosmopolitan invasive plant

(2017) Jennifer L. Bowen et al.   Nature Communications

Lactobacillus plantarum HNU082-derived improvements in the intestinal microbiome prevent the development of hyperlipidaemia

(2017) Yuyu Shao et al.   Food & Function

Taxonomic structure and functional association of foxtail millet root microbiome

(2017) Tao Jin et al.   GigaScience

Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome

(2017) Yunzeng Zhang et al.   Microbiome

Composition, diversity and bioactivity of culturable bacterial endophytes in mountain-cultivated ginseng in Korea

(2017) MD. Emran Khan Chowdhury et al.   Scientific Reports

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Alleviation of heavy metals toxicity by the application of plant growth promoting rhizobacteria and effects on wheat grown in saline sodic field

(2016) Tamoor Ul Hassan et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Analysis of the Fungal Diversity in Citrus Leaves with Greasy Spot Disease Symptoms

(2016) Ahmed Abdelfattah et al.   MICROBIAL ECOLOGY

The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen

(2016) Unyarat Ritpitakphong et al.   NEW PHYTOLOGIST

Bacterial Abilities and Adaptation Toward the Rhizosphere Colonization

(2016) Lucas D. Lopes et al.   Frontiers in Microbiology

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure

(2016) Isabelle Laforest-Lapointe et al.   Microbiome

Spatial and compositional variation in the fungal communities of organic and conventionally grown apple fruit at the consumer point-of-purchase

(2016) Ahmed Abdelfattah et al.   Horticulture Research

Metagenomic Analysis of Fungal Diversity on Strawberry Plants and the Effect of Management Practices on the Fungal Community Structure of Aerial Organs

(2016) Ahmed Abdelfattah et al.   PLoS One

Tillage practices and straw-returning methods affect topsoil bacterial community and organic C under a rice-wheat cropping system in central China

(2016) Lijin Guo et al.   Scientific Reports

Effect of biofertilizer for suppressing Fusarium wilt disease of banana as well as enhancing microbial and chemical properties of soil under greenhouse trial

(2015) Zongzhuan Shen et al.   APPLIED SOIL ECOLOGY

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Use of plant colonizing bacteria as chassis for transfer of N 2 -fixation to cereals

(2015) Barney A Geddes et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root surface as a frontier for plant microbiome research: Fig. 1.

(2015) Marcel G. A. van der Heijden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pineapple–banana rotation reduced the amount of Fusarium oxysporum more than maize–banana rotation mainly through modulating fungal communities

(2015) Beibei Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil microbial community variation correlates most strongly with plant species identity, followed by soil chemistry, spatial location and plant genus

(2015) J. H. Burns et al.   AoB Plants

Enhanced Control of Cucumber Wilt Disease by Bacillus amyloliquefaciens SQR9 by Altering the Regulation of Its DegU Phosphorylation

(2014) Z. Xu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait

(2014) Eleonora Rolli et al.   ENVIRONMENTAL MICROBIOLOGY

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

(2014) Gregory Bonito et al.   MOLECULAR ECOLOGY

Niche and host-associated functional signatures of the root surface microbiome

(2014) Maya Ofek-Lalzar et al.   Nature Communications

Responses of beneficial Bacillus amyloliquefaciens SQR9 to different soilborne fungal pathogens through the alteration of antifungal compounds production

(2014) Bing Li et al.   Frontiers in Microbiology

Community terminal restriction fragment length polymorphisms reveal insights into the diversity and dynamics of leaf endophytic bacteria

(2013) Tao Ding et al.   BMC MICROBIOLOGY

Application of Natural Blends of Phytochemicals Derived from the Root Exudates ofArabidopsisto the Soil Reveal That Phenolic-related Compounds Predominantly Modulate the Soil Microbiome

(2013) Dayakar V. Badri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Root Exudation of Phytochemicals in Arabidopsis Follows Specific Patterns That Are Developmentally Programmed and Correlate with Soil Microbial Functions

(2013) Jacqueline M. Chaparro et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenotypic approaches to drought in cassava: review

(2013) Emmanuel Okogbenin et al.   Frontiers in Physiology

Identification of volatile compounds produced by the bacteriumBurkholderia tropicathat inhibit the growth of fungal pathogens

(2013) Silvia Tenorio-Salgado et al.   Bioengineered

Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria

(2012) Jos M. Raaijmakers et al.   Annual Review of Phytopathology

Transcriptome Analysis Using a High-Density Oligomicroarray under Drought Stress in Various Genotypes of Cassava: An Important Tropical Crop

(2012) Y. Utsumi et al.   DNA RESEARCH

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Global metabolic profiling of animal and human tissues via UPLC-MS

(2012) Elizabeth J Want et al.   Nature Protocols

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Effect of biocontrol agents and biofertilizers on root rot, yield, harvest index and nutrient uptake of cassava (Manihot esculantaCrantz)

(2012) A.C. Hridya et al.   Archives of Agronomy and Soil Science

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Soil and Cultivar Type Shape the Bacterial Community in the Potato Rhizosphere

(2011) Özgül İnceoğlu et al.   MICROBIAL ECOLOGY

The Plant Growth–Promoting RhizobacteriumBacillus cereusAR156 Induces Systemic Resistance inArabidopsis thalianaby Simultaneously Activating Salicylate- and Jasmonate/Ethylene-Dependent Signaling Pathways

(2011) Dong-Dong Niu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated with Different Potato Cultivars in Two Fields

(2010) O. Inceoglu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities

(2010) Manuel Aira et al.   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant–microbes interactions in enhanced fertilizer-use efficiency

(2009) Anthony O. Adesemoye et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Phenazine antibiotics produced by fluorescent pseudomonads contribute to natural soil suppressiveness to Fusarium wilt

(2009) Sylvie Mazurier et al.   ISME Journal

Influence of Arabidopsis thaliana accessions on rhizobacterial communities and natural variation in root exudates

(2009) Shirley A. Micallef et al.   JOURNAL OF EXPERIMENTAL BOTANY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

A soil bacterium regulates plant acquisition of iron via deficiency-inducible mechanisms

(2009) Huiming Zhang et al.   PLANT JOURNAL

Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.)

(2008) Leo Van Overbeek et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of sorghum seedlings, and previous crop, on soil fluorescent Pseudomonas spp.

(2008) Deanna L. Funnell-Harris et al.   PLANT AND SOIL

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Bacterial communities in soybean rhizosphere in response to soil type, soybean genotype, and their growth stage

(2008) Yanxia Xu et al.   SOIL BIOLOGY & BIOCHEMISTRY