Plant host habitat and root exudates shape fungal diversity

Transcriptome profiling of two maize inbreds with distinct responses to Gibberella ear rot disease to identify candidate resistance genes

(2018) Aida Z. Kebede et al.   BMC GENOMICS

Distribution of fungal endophytes in roots of Stipa krylovii across six vegetation types in grassland of northern China

(2018) Xinyu Li et al.   Fungal Ecology

Metabolic coupling on roots

(2018) Gwyn A. Beattie   Nature Microbiology

Root exudation rate as functional trait involved in plant nutrient-use strategy classification

(2018) Julien P. Guyonnet et al.   Ecology and Evolution

Plant traits determine the phylogenetic structure of arbuscular mycorrhizal fungal communities

(2017) Álvaro López-García et al.   MOLECULAR ECOLOGY

Potential of Endophytic Fungi Isolated from Cotton Roots for Biological Control against Verticillium Wilt Disease

(2017) Yuan Yuan et al.   PLoS One

Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth

(2017) Ziting Wang et al.   Frontiers in Microbiology

Stable isotope probing of carbon flow in the plant holobiont

(2016) Feth el Zahar Haichar et al.   CURRENT OPINION IN BIOTECHNOLOGY

Plant and root endophyte assembly history: interactive effects on native and exotic plants

(2016) Benjamin A. Sikes et al.   ECOLOGY

Spatial Distribution of Fungal Communities in an Arable Soil

(2016) Julia Moll et al.   PLoS One

Take a Trip Through the Plant and Fungal Transportome of Mycorrhiza

(2016) Kevin Garcia et al.   TRENDS IN PLANT SCIENCE

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Using plant traits to explain plant–microbe relationships involved in nitrogen acquisition

(2015) Amélie A. M. Cantarel et al.   ECOLOGY

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

Responses of soil microeukaryotic communities to short-term fumigation-incubation revealed by MiSeq amplicon sequencing

(2015) Lin Chen et al.   Frontiers in Microbiology

Effects of Arbuscular Mycorrhiza Fungi on Growth Characteristics of Dactylis glomerata L. under Drought Stress Conditions

(2015) Apostolos P. KYRIAZOPOULOS et al.   Notulae Botanicae Horti Agrobotanici Cluj-Napoca

Coprophilous contributions to the phylogeny of Lasiosphaeriaceae and allied taxa within Sordariales (Ascomycota, Fungi)

(2014) Åsa Kruys et al.   FUNGAL DIVERSITY

The world-wide ‘fast-slow’ plant economics spectrum: a traits manifesto

(2014) Peter B. Reich   JOURNAL OF ECOLOGY

Root exudates mediated interactions belowground

(2014) Feth el Zahar Haichar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Negative and positive contributions of arbuscular mycorrhizal fungal taxa to wheat production and nutrient uptake efficiency in organic and conventional systems in the Canadian prairie

(2014) Mulan Dai et al.   SOIL BIOLOGY & BIOCHEMISTRY

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Effects of two grass species on the composition of soil fungal communities

(2013) B. Mouhamadou et al.   BIOLOGY AND FERTILITY OF SOILS

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Global Leaf Trait Relationships: Mass, Area, and the Leaf Economics Spectrum

(2013) J. L. D. Osnas et al.   SCIENCE

A trait-based framework to understand life history of mycorrhizal fungi

(2013) Pierre-Luc Chagnon et al.   TRENDS IN PLANT SCIENCE

Host Plant Specific Control of 2,4-Diacetylphloroglucinol Production in the Rhizosphere

(2013) Feth Haichar et al.   Agronomy-Basel

Host Preferences of Arbuscular Mycorrhizal Fungi Colonizing Annual Herbaceous Plant Species in Semiarid Mediterranean Prairies

(2012) E. Torrecillas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Linking fungal communities in roots, rhizosphere, and soil to the health status ofPisum sativum

(2012) Lihui Xu et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Root and leaf functional trait relations in Poaceae species: implications of differing resource-acquisition strategies

(2012) F. Fort et al.   Journal of Plant Ecology

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The role of roots in the resource economics spectrum

(2012) Liesje Mommer et al.   NEW PHYTOLOGIST

13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline

(2012) S. E. Hannula et al.   NEW PHYTOLOGIST

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Endophytic fungi community associated with the dicotyledonous plant Colobanthus quitensis (Kunth) Bartl. (Caryophyllaceae) in Antarctica

(2010) Luiz Henrique Rosa et al.   FEMS MICROBIOLOGY ECOLOGY

Labile soil carbon inputs mediate the soil microbial community composition and plant residue decomposition rates

(2010) Marie-Anne de Graaff et al.   NEW PHYTOLOGIST

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

(2010) M. Öpik et al.   NEW PHYTOLOGIST

Traits related to differences in function among three arbuscular mycorrhizal fungi

(2010) Cécile Thonar et al.   PLANT AND SOIL

Production of extracellular enzymes and degradation of biopolymers by saprotrophic microfungi from the upper layers of forest soil

(2010) Petr Baldrian et al.   PLANT AND SOIL

The importance and ecology of yeasts in soil

(2010) Alfred Botha   SOIL BIOLOGY & BIOCHEMISTRY

Pathogenesis, parasitism and mutualism in the trophic space of microbe–plant interactions

(2010) Adrian C. Newton et al.   TRENDS IN MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach

(2009) Erica Lumini et al.   ENVIRONMENTAL MICROBIOLOGY

Linking individual response to biotic interactions with community structure: a trait-based framework

(2009) Nicolas Gross et al.   FUNCTIONAL ECOLOGY

Determining species diversity of microfungal communities in forest tree roots by pure-culture isolation and DNA sequencing

(2008) Hanna Kwaśna et al.   APPLIED SOIL ECOLOGY

Plant functional traits and soil carbon sequestration in contrasting biomes

(2008) Gerlinde B. De Deyn et al.   ECOLOGY LETTERS

Use of 13C labeling to assess carbon partitioning in transgenic and nontransgenic (parental) rice and their rhizosphere soil microbial communities

(2008) Wei Xiang Wu et al.   FEMS MICROBIOLOGY ECOLOGY

Plant host habitat and root exudates shape soil bacterial community structure

(2008) Feth el Zahar Haichar et al.   ISME Journal

Intragenomic Variation of Fungal Ribosomal Genes Is Higher than Previously Thought

(2008) U. K. Simon et al.   MOLECULAR BIOLOGY AND EVOLUTION

The arbuscular mycorrhizal symbiosis links N mineralization to plant demand

(2008) A. Atul-Nayyar et al.   MYCORRHIZA

Effect of soil type and soybean genotype on fungal community in soybean rhizosphere during reproductive growth stages

(2008) Guanghua Wang et al.   PLANT AND SOIL

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Impact of wheat straw decomposition on successional patterns of soil microbial community structure

(2008) Fabiola Bastian et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial community composition and rhizodeposit-carbon assimilation in differently managed temperate grassland soils

(2008) Karolien Denef et al.   SOIL BIOLOGY & BIOCHEMISTRY

Plant nutrient-acquisition strategies change with soil age

(2008) H LAMBERS et al.   TRENDS IN ECOLOGY & EVOLUTION