Systematic exploration of Escherichia coli phage–host interactions with the BASEL phage collection
出版年份 2021 全文链接
标题
Systematic exploration of Escherichia coli phage–host interactions with the BASEL phage collection
作者
关键词
Bacteriophages, Escherichia coli, Immunity, Phylogenetics, Viral genomics, Caudovirales, Genomics, Sequence alignment
出版物
PLOS BIOLOGY
Volume 19, Issue 11, Pages e3001424
出版商
Public Library of Science (PLoS)
发表日期
2021-11-17
DOI
10.1371/journal.pbio.3001424
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Compilation of Escherichia coli K-12 outer membrane phage receptors - their function and some historical remarks
- (2020) Klaus Hantke FEMS MICROBIOLOGY LETTERS
- The arms race between bacteria and their phage foes
- (2020) Hannah G. Hampton et al. NATURE
- Phage diversity, genomics and phylogeny
- (2020) Moïra B. Dion et al. NATURE REVIEWS MICROBIOLOGY
- Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages
- (2020) Aurélie Mathieu et al. Nature Communications
- Systematic Localization of Escherichia coli Membrane Proteins
- (2020) Anna Sueki et al. mSystems
- Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee
- (2020) Evelien M. Adriaenssens et al. ARCHIVES OF VIROLOGY
- Current challenges and future opportunities of phage therapy
- (2020) Diana P Pires et al. FEMS MICROBIOLOGY REVIEWS
- Conserved and Diverse Traits of Adhesion Devices from Siphoviridae Recognizing Proteinaceous or Saccharidic Receptors
- (2020) Adeline Goulet et al. Viruses-Basel
- Genome-wide screens reveal Escherichia coli genes required for growth of T1-like phage LL5 and V5-like phage LL12
- (2020) Denish Piya et al. Scientific Reports
- High-throughput discovery of phage receptors using transposon insertion sequencing of bacteria
- (2020) Kaitlyn E. Kortright et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Abortive Infection: Bacterial Suicide as an Antiviral Immune Strategy
- (2020) Anna Lopatina et al. Annual Review of Virology
- Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment
- (2020) Nikoline S. Olsen et al. Viruses-Basel
- New insights into the biodiversity of coliphages in the intestine of poultry
- (2020) Patricia E. Sørensen et al. Scientific Reports
- High-throughput mapping of the phage resistance landscape in E. coli
- (2020) Vivek K. Mutalik et al. PLOS BIOLOGY
- Lessons Learned From the First 10 Consecutive Cases of Intravenous Bacteriophage Therapy to Treat Multidrug-Resistant Bacterial Infections at a Single Center in the United States
- (2020) Saima Aslam et al. Open Forum Infectious Diseases
- Unlocking the next generation of phage therapy: the key is in the receptors
- (2020) Fernando L Gordillo Altamirano et al. CURRENT OPINION IN BIOTECHNOLOGY
- Phage Therapy in the Postantibiotic Era
- (2019) Fernando L. Gordillo Altamirano et al. CLINICAL MICROBIOLOGY REVIEWS
- The genera of bacteriophages and their receptors are the major determinants of host range
- (2019) Yilmaz Emre Gencay et al. ENVIRONMENTAL MICROBIOLOGY
- Riding the wave of genomics to investigate aquatic coliphage diversity and activity
- (2019) Slawomir Michniewski et al. ENVIRONMENTAL MICROBIOLOGY
- Phage Therapy: A Renewed Approach to Combat Antibiotic-Resistant Bacteria
- (2019) Kaitlyn E. Kortright et al. Cell Host & Microbe
- multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
- (2019) Carol L Ecale Zhou et al. BIOINFORMATICS
- Phage therapy’s latest makeover
- (2019) Charles Schmidt NATURE BIOTECHNOLOGY
- Screening of Polyvalent Phage-Resistant Escherichia coli Strains Based on Phage Receptor Analysis
- (2019) Ping Li et al. Frontiers in Microbiology
- Massive antibody discovery used to probe structure–function relationships of the essential outer membrane protein LptD
- (2019) Kelly M Storek et al. eLife
- Phage tail fibre assembly proteins employ a modular structure to drive the correct folding of diverse fibres
- (2019) Olesia I. North et al. Nature Microbiology
- A Quest of Great Importance-Developing a Broad Spectrum Escherichia coli Phage Collection
- (2019) Joanna Kaczorowska et al. Viruses-Basel
- Structure and genetics of Escherichia coli O antigens
- (2019) Bin Liu et al. FEMS MICROBIOLOGY REVIEWS
- The pan-immune system of bacteria: antiviral defence as a community resource
- (2019) Aude Bernheim et al. NATURE REVIEWS MICROBIOLOGY
- Steering Phages to Combat Bacterial Pathogens
- (2019) James Gurney et al. TRENDS IN MICROBIOLOGY
- Structures of T7 bacteriophage portal and tail suggest a viral DNA retention and ejection mechanism
- (2019) Ana Cuervo et al. Nature Communications
- 7-Deazaguanine modifications protect phage DNA from host restriction systems
- (2019) Geoffrey Hutinet et al. Nature Communications
- Reprogramming Bacteriophage Host Range through Structure-Guided Design of Chimeric Receptor Binding Proteins
- (2019) Matthew Dunne et al. Cell Reports
- Natural Occurrence of Escherichia coli-Infecting Bacteriophages in Clinical Samples
- (2019) Cátia Pacífico et al. Frontiers in Microbiology
- Genome variation and molecular epidemiology of Salmonella Typhimurium pathovariants
- (2018) Priscilla Branchu et al. INFECTION AND IMMUNITY
- The Odd “RB” Phage—Identification of Arabinosylation as a New Epigenetic Modification of DNA in T4-Like Phage RB69
- (2018) Julie Thomas et al. Viruses-Basel
- A comprehensive and quantitative exploration of thousands of viral genomes
- (2018) Gita Mahmoudabadi et al. eLife
- Phage puppet masters of the marine microbial realm
- (2018) Mya Breitbart et al. Nature Microbiology
- Phage spanins: diversity, topological dynamics and gene convergence
- (2018) Rohit Kongari et al. BMC BIOINFORMATICS
- Targeting mechanisms of tailed bacteriophages
- (2018) Franklin L. Nobrega et al. NATURE REVIEWS MICROBIOLOGY
- Avoidance of recognition sites of restriction-modification systems is a widespread but not universal anti-restriction strategy of prokaryotic viruses
- (2018) I. S. Rusinov et al. BMC GENOMICS
- RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12
- (2018) Alberto Santos-Zavaleta et al. NUCLEIC ACIDS RESEARCH
- InterPro in 2019: improving coverage, classification and access to protein sequence annotations
- (2018) Alex L Mitchell et al. NUCLEIC ACIDS RESEARCH
- Engineering Bacteriophages as Versatile Biologics
- (2018) Samuel Kilcher et al. TRENDS IN MICROBIOLOGY
- Comparative Genomics of Bacteriophage of the Genus Seuratvirus
- (2017) Pavelas Sazinas et al. Genome Biology and Evolution
- Lysogeny in nature: mechanisms, impact and ecology of temperate phages
- (2017) Cristina Howard-Varona et al. ISME Journal
- Not a barrier but a key: How bacteriophages exploit host's O-antigen as an essential receptor to initiate infection
- (2017) Nina K. Broeker et al. MOLECULAR MICROBIOLOGY
- Function of bacteriophage G7C esterase tailspike in host cell adsorption
- (2017) Nikolai S. Prokhorov et al. MOLECULAR MICROBIOLOGY
- Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
- (2017) Elliot J Lefkowitz et al. NUCLEIC ACIDS RESEARCH
- Comparative analysis of the end-joining activity of several DNA ligases
- (2017) Robert J. Bauer et al. PLoS One
- How to Name and Classify Your Phage: An Informal Guide
- (2017) Evelien Adriaenssens et al. Viruses-Basel
- Prophages and Growth Dynamics Confound Experimental Results with Antibiotic-Tolerant Persister Cells
- (2017) Alexander Harms et al. mBio
- Characterization of two polyvalent phages infecting Enterobacteriaceae
- (2017) Sana Hamdi et al. Scientific Reports
- PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data
- (2017) Julian R. Garneau et al. Scientific Reports
- The Power of Asymmetry: Architecture and Assembly of the Gram-Negative Outer Membrane Lipid Bilayer
- (2016) Jeremy C. Henderson et al. Annual Review of Microbiology
- Biosynthesis and Function of Modified Bases in Bacteria and Their Viruses
- (2016) Peter Weigele et al. CHEMICAL REVIEWS
- Bacterial Autoimmunity Due to a Restriction-Modification System
- (2016) Maroš Pleška et al. CURRENT BIOLOGY
- Branched Lateral Tail Fiber Organization in T5-Like Bacteriophages DT57C and DT571/2 is Revealed by Genetic and Functional Analysis
- (2016) Alla Golomidova et al. Viruses-Basel
- Characterization of the interactions betweenEscherichia colireceptors, LPS and OmpC, and bacteriophage T4 long tail fibers
- (2016) Ayaka Washizaki et al. MicrobiologyOpen
- Viruses as Winners in the Game of Life
- (2016) Ana Georgina Cobián Güemes et al. Annual Review of Virology
- Application of zinc chloride precipitation method for rapid isolation and concentration of infectious Pectobacterium spp. and Dickeya spp. lytic bacteriophages from surface water and plant and soil extracts
- (2015) Robert Czajkowski et al. FOLIA MICROBIOLOGICA
- Conformational Changes Leading to T7 DNA Delivery upon Interaction with the Bacterial Receptor
- (2015) Verónica A. González-García et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- Structural remodeling of bacteriophage T4 and host membranes during infection initiation
- (2015) Bo Hu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacteriophage lambda: Early pioneer and still relevant
- (2015) Sherwood R. Casjens et al. VIROLOGY
- Incomplete LPS Core-Specific Felix01-Like Virus vB_EcoM_VpaE1
- (2015) Eugenijus Šimoliūnas et al. Viruses-Basel
- Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing
- (2015) Hiroki Ando et al. Cell Systems
- A century of phage research: Bacteriophages and the shaping of modern biology
- (2014) Eric C. Keen BIOESSAYS
- REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
- (2014) Richard J. Roberts et al. NUCLEIC ACIDS RESEARCH
- Type II restriction endonucleases—a historical perspective and more
- (2014) Alfred Pingoud et al. NUCLEIC ACIDS RESEARCH
- Understanding the enormous diversity of bacteriophages: The tailed phages that infect the bacterial family Enterobacteriaceae
- (2014) Julianne H. Grose et al. VIROLOGY
- A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students
- (2014) T. C. Jordan et al. mBio
- Remarkable Mechanisms in Microbes to Resist Phage Infections
- (2014) Ron L. Dy et al. Annual Review of Virology
- Structural analysis of O-polysaccharide chains extracted from different Salmonella Typhimurium strains
- (2013) Francesca Micoli et al. CARBOHYDRATE RESEARCH
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Type I restriction enzymes and their relatives
- (2013) W. A. M. Loenen et al. NUCLEIC ACIDS RESEARCH
- Type III restriction-modification enzymes: a historical perspective
- (2013) Desirazu N. Rao et al. NUCLEIC ACIDS RESEARCH
- The Bacteriophage T7 Virion Undergoes Extensive Structural Remodeling During Infection
- (2013) B. Hu et al. SCIENCE
- The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5
- (2013) Andrew M Kropinski et al. Virology Journal
- A Multivalent Adsorption Apparatus Explains the Broad Host Range of Phage phi92: a Comprehensive Genomic and Structural Analysis
- (2012) D. Schwarzer et al. JOURNAL OF VIROLOGY
- Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda
- (2012) J. R. Meyer et al. SCIENCE
- The gp38 Adhesins of the T4 Superfamily: A Complex Modular Determinant of the Phage’s Host Specificity
- (2011) Sabrina N. Trojet et al. Genome Biology and Evolution
- A reliable method for storage of tailed phages
- (2011) Piotr Golec et al. JOURNAL OF MICROBIOLOGICAL METHODS
- The population genetics of commensal Escherichia coli
- (2010) Olivier Tenaillon et al. NATURE REVIEWS MICROBIOLOGY
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Complete Genomic Sequence of Bacteriophage Felix O1
- (2010) Jean M. Whichard et al. Viruses-Basel
- An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol
- (2009) Huanting Liu et al. BMC BIOTECHNOLOGY
- FhuA (TonA), the Career of a Protein
- (2009) V. Braun JOURNAL OF BACTERIOLOGY
- Understanding the Differences between Genome Sequences of Escherichia coli B Strains REL606 and BL21(DE3) and Comparison of the E. coli B and K-12 Genomes
- (2009) F. William Studier et al. JOURNAL OF MOLECULAR BIOLOGY
- Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3)
- (2009) Haeyoung Jeong et al. JOURNAL OF MOLECULAR BIOLOGY
- Enzymatic assembly of DNA molecules up to several hundred kilobases
- (2009) Daniel G Gibson et al. NATURE METHODS
- Origins and virulence mechanisms of uropathogenic Escherichia coli
- (2008) Travis J. Wiles et al. EXPERIMENTAL AND MOLECULAR PATHOLOGY
- Identification of host receptor and receptor-binding module of a newly sequenced T5-like phage EPS7
- (2008) Junwoo Hong et al. FEMS MICROBIOLOGY LETTERS
- The Tail Sheath of Bacteriophage N4 Interacts with the Escherichia coli Receptor
- (2008) J. McPartland et al. JOURNAL OF BACTERIOLOGY
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