标题
Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs
作者
关键词
-
出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-10-14
DOI
10.1038/s41467-021-26233-8
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Defining the functions of PIWI-interacting RNAs
- (2021) Pei-Hsuan Wu et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Long first exons and epigenetic marks distinguish conserved pachytene piRNA clusters from other mammalian genes
- (2021) Tianxiong Yu et al. Nature Communications
- Single-molecule long-read sequencing reveals a conserved intact long RNA profile in sperm
- (2021) Yu H. Sun et al. Nature Communications
- 40S ribosome profiling reveals distinct roles for Tma20/Tma22 (MCT-1/DENR) and Tma64 (eIF2D) in 40S subunit recycling
- (2021) David J. Young et al. Nature Communications
- Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors
- (2020) Yu H. Sun et al. NATURE CELL BIOLOGY
- The FOXJ1 target Cfap206 is required for sperm motility, mucociliary clearance of the airways and brain development
- (2020) Anja Beckers et al. DEVELOPMENT
- Selective 40S Footprinting Reveals Cap-Tethered Ribosome Scanning in Human Cells
- (2020) Jonathan Bohlen et al. MOLECULAR CELL
- The evolutionarily conserved piRNA-producing locus pi6 is required for male mouse fertility
- (2020) Pei-Hsuan Wu et al. NATURE GENETICS
- Ribosome Recycling by ABCE1 Links Lysosomal Function and Iron Homeostasis to 3ʹ UTR-Directed Regulation and Nonsense-Mediated Decay
- (2020) Xiaoqiang Zhu et al. Cell Reports
- Readthrough of stop codons under limiting ABCE1 concentration involves frameshifting and inhibits nonsense-mediated mRNA decay
- (2020) Giuditta Annibaldis et al. NUCLEIC ACIDS RESEARCH
- DENR promotes translation reinitiation via ribosome recycling to drive expression of oncogenes including ATF4
- (2020) Jonathan Bohlen et al. Nature Communications
- Quality and quantity control of gene expression by nonsense-mediated mRNA decay
- (2019) Tatsuaki Kurosaki et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- PNLDC1, mouse pre‐piRNA Trimmer, is required for meiotic and post‐meiotic male germ cell development
- (2018) Toru Nishimura et al. EMBO REPORTS
- DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution
- (2018) Xuhua Xia MOLECULAR BIOLOGY AND EVOLUTION
- Roadblocks and resolutions in eukaryotic translation
- (2018) Anthony P. Schuller et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- TDRD5 binds piRNA precursors and selectively enhances pachytene piRNA processing in mice
- (2018) Deqiang Ding et al. Nature Communications
- Eukaryotic translation initiation factor 3 (eIF3) subunit e is essential for embryonic development and cell proliferation
- (2018) Daichi Sadato et al. FEBS Open Bio
- Tma64/eIF2D, Tma20/MCT-1, and Tma22/DENR Recycle Post-termination 40S Subunits In Vivo
- (2018) David J. Young et al. MOLECULAR CELL
- A Single Mechanism of Biogenesis, Initiated and Directed by PIWI Proteins, Explains piRNA Production in Most Animals
- (2018) Ildar Gainetdinov et al. MOLECULAR CELL
- A heterochromatin-dependent transcription machinery drives piRNA expression
- (2017) Peter Refsing Andersen et al. NATURE
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Functional 5′ UTR mRNA structures in eukaryotic translation regulation and how to find them
- (2017) Kathrin Leppek et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- ALKBH5-dependent m6A demethylation controls splicing and stability of long 3′-UTR mRNAs in male germ cells
- (2017) Chong Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- PNLDC1 is essential for piRNA 3′ end trimming and transposon silencing during spermatogenesis in mice
- (2017) Deqiang Ding et al. Nature Communications
- The emergence of piRNAs against transposon invasion to preserve mammalian genome integrity
- (2017) Christina Ernst et al. Nature Communications
- Domestic chickens activate a piRNA defense against avian leukosis virus
- (2017) Yu Huining Sun et al. eLife
- Alternative cleavage and polyadenylation in spermatogenesis connects chromatin regulation with post-transcriptional control
- (2016) Wencheng Li et al. BMC BIOLOGY
- The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay
- (2016) Eleen Y. Shum et al. CELL
- The RNase PARN-1 Trims piRNA 3′ Ends to Promote Transcriptome Surveillance in C. elegans
- (2016) Wen Tang et al. CELL
- Identification and Functional Analysis of the Pre-piRNA 3′ Trimmer in Silkworms
- (2016) Natsuko Izumi et al. CELL
- Ribosome Footprint Profiling of Translation throughout the Genome
- (2016) Nicholas T. Ingolia CELL
- High-throughput discovery of novel developmental phenotypes
- (2016) Mary E. Dickinson et al. NATURE
- Dynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets
- (2016) Eric W. Mills et al. Cell Reports
- TMEM258 Is a Component of the Oligosaccharyltransferase Complex Controlling ER Stress and Intestinal Inflammation
- (2016) Daniel B. Graham et al. Cell Reports
- Mutations in Dnaaf1 and Lrrc48 Cause Hydrocephalus, Laterality Defects, and Sinusitis in Mice
- (2016) Seungshin Ha et al. G3-Genes Genomes Genetics
- UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3'UTR Transcripts
- (2016) Jianqiang Bao et al. PLoS Genetics
- How Retroviruses Escape the Nonsense-Mediated mRNA Decay
- (2015) Vincent Mocquet et al. AIDS RESEARCH AND HUMAN RETROVIRUSES
- Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3′UTRs In Vivo
- (2015) David J. Young et al. CELL
- MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes
- (2015) Peng Zhang et al. CELL RESEARCH
- The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing
- (2015) Anastassios Vourekas et al. GENES & DEVELOPMENT
- piRNA-directed cleavage of meiotic transcripts regulates spermatogenesis
- (2015) Wee Siong Sho Goh et al. GENES & DEVELOPMENT
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- piRNA-guided slicing specifies transcripts for Zucchini-dependent, phased piRNA biogenesis
- (2015) F. Mohn et al. SCIENCE
- piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production
- (2015) B. W. Han et al. SCIENCE
- PIWI Slicing and RNA Elements in Precursors Instruct Directional Primary piRNA Biogenesis
- (2015) David Homolka et al. Cell Reports
- Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb
- (2015) Hirotsugu Ishizu et al. Cell Reports
- Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals
- (2015) Gung-wei Chirn et al. PLoS Genetics
- HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse
- (2015) Shu Ly Lim et al. PLoS Genetics
- piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing
- (2014) Bo W. Han et al. BIOINFORMATICS
- The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila
- (2014) Fabio Mohn et al. CELL
- The HP1 Homolog Rhino Anchors a Nuclear Complex that Suppresses piRNA Precursor Splicing
- (2014) Zhao Zhang et al. CELL
- Dom34 Rescues Ribosomes in 3′ Untranslated Regions
- (2014) Nicholas R. Guydosh et al. CELL
- Pachytene piRNAs instruct massive mRNA elimination during late spermiogenesis
- (2014) Lan-Tao Gou et al. CELL RESEARCH
- piRNAs
- (2014) Bo W. Han et al. CURRENT BIOLOGY
- Glucose metabolism transporters and epilepsy: Only GLUT1 has an established role
- (2014) Michael S. Hildebrand et al. EPILEPSIA
- Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing
- (2014) Adrien Le Thomas et al. GENES & DEVELOPMENT
- Retrotransposons and pseudogenes regulate mRNAs and lncRNAs via the piRNA pathway in the germline
- (2014) Toshiaki Watanabe et al. GENOME RESEARCH
- The arginine methyltransferase NDUFAF7 is essential for complex I assembly and early vertebrate embryogenesis
- (2014) Olga Zurita Rendón et al. HUMAN MOLECULAR GENETICS
- Modified ribosome profiling reveals high abundance of ribosome protected mRNA fragments derived from 3′ untranslated regions
- (2014) Teemu P. Miettinen et al. NUCLEIC ACIDS RESEARCH
- Nonsense-mediated mRNA decay — Mechanisms of substrate mRNA recognition and degradation in mammalian cells
- (2013) Christoph Schweingruber et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germline
- (2013) Jonathan P Saxe et al. EMBO JOURNAL
- Temporal and spatial characterization of nonsense-mediated mRNA decay
- (2013) T. Trcek et al. GENES & DEVELOPMENT
- The Hbs1-Dom34 Protein Complex Functions in Non-stop mRNA Decay in Mammalian Cells
- (2013) Syuhei Saito et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Multiple Epigenetic Mechanisms and the piRNA Pathway Enforce LINE1 Silencing during Adult Spermatogenesis
- (2013) Monica Di Giacomo et al. MOLECULAR CELL
- Reinitiation and Other Unconventional Posttermination Events during Eukaryotic Translation
- (2013) Maxim A. Skabkin et al. MOLECULAR CELL
- An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes
- (2013) Xin Zhiguo Li et al. MOLECULAR CELL
- Comparative analysis of RNA sequencing methods for degraded or low-input samples
- (2013) Xian Adiconis et al. NATURE METHODS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- UAP56 Couples piRNA Clusters to the Perinuclear Transposon Silencing Machinery
- (2012) Fan Zhang et al. CELL
- Mouse large-scale phenotyping initiatives: overview of the European Mouse Disease Clinic (EUMODIC) and of the Wellcome Trust Sanger Institute Mouse Genetics Project
- (2012) Abdel Ayadi et al. MAMMALIAN GENOME
- Structure and function of Zucchini endoribonuclease in piRNA biogenesis
- (2012) Hiroshi Nishimasu et al. NATURE
- The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis
- (2012) Jonathan J. Ipsaro et al. NATURE
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Regulation of cytoplasmic mRNA decay
- (2012) Daniel R. Schoenberg et al. NATURE REVIEWS GENETICS
- Surveillance pathways rescuing eukaryotic ribosomes lost in translation
- (2012) Marc Graille et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- NMD: a multifaceted response to premature translational termination
- (2012) Stephanie Kervestin et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis
- (2012) Anastassios Vourekas et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Translation drives mRNA quality control
- (2012) Christopher J Shoemaker et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Selective Depletion of rRNA Enables Whole Transcriptome Profiling of Archival Fixed Tissue
- (2012) John D. Morlan et al. PLoS One
- Crystal structure of the primary piRNA biogenesis factor Zucchini reveals similarity to the bacterial PLD endonuclease Nuc
- (2012) F. Voigt et al. RNA
- The Elongation, Termination, and Recycling Phases of Translation in Eukaryotes
- (2012) T. E. Dever et al. Cold Spring Harbor Perspectives in Biology
- Blockade of Pachytene piRNA Biogenesis Reveals a Novel Requirement for Maintaining Post-Meiotic Germline Genome Integrity
- (2012) Ke Zheng et al. PLoS Genetics
- Argonaute proteins
- (2011) Elif Sarinay Cenik et al. CURRENT BIOLOGY
- A-MYB (MYBL1) transcription factor is a master regulator of male meiosis
- (2011) E. Bolcun-Filas et al. DEVELOPMENT
- Zygotic amplification of secondary piRNAs during silkworm embryogenesis
- (2011) S. Kawaoka et al. RNA
- The Pioneer Round of Translation: Features and Functions
- (2010) Lynne E. Maquat et al. CELL
- Upf1 Senses 3′UTR Length to Potentiate mRNA Decay
- (2010) J. Robert Hogg et al. CELL
- Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway
- (2010) K. Zheng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MOV10L1 is necessary for protection of spermatocytes against retrotransposons by Piwi-interacting RNAs
- (2010) R. J. A. Frost et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Translation efficiency is determined by both codon bias and folding energy
- (2010) Tamir Tuller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
- (2010) Doron Betel et al. GENOME BIOLOGY
- The Biogenesis and Function of PIWI Proteins and piRNAs: Progress and Prospect
- (2009) Travis Thomson et al. Annual Review of Cell and Developmental Biology
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The Drosophila HP1 Homolog Rhino Is Required for Transposon Silencing and piRNA Production by Dual-Strand Clusters
- (2009) Carla Klattenhoff et al. CELL
- A Signaling Principle for the Specification of the Germ Cell Lineage in Mice
- (2009) Yasuhide Ohinata et al. CELL
- A Broadly Conserved Pathway Generates 3′UTR-Directed Primary piRNAs
- (2009) Nicolas Robine et al. CURRENT BIOLOGY
- Analysis of Dom34 and Its Function in No-Go Decay
- (2009) Dario O. Passos et al. MOLECULAR BIOLOGY OF THE CELL
- A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila
- (2009) Kuniaki Saito et al. NATURE
- Biogenesis of small RNAs in animals
- (2009) V. Narry Kim et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Cell-type-specific isolation of ribosome-associated mRNA from complex tissues
- (2009) E. Sanz et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The mammalian phenotype ontology: enabling robust annotation and comparative analysis
- (2009) Cynthia L. Smith et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- CAIcal: A combined set of tools to assess codon usage adaptation
- (2008) Pere Puigbò et al. Biology Direct
- E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
- (2008) Pere Puigbò et al. BMC BIOINFORMATICS
- Sorting Out Small RNAs
- (2008) V. Narry Kim CELL
- The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members
- (2008) T. A. Farazi et al. DEVELOPMENT
- A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice
- (2008) Alexei A. Aravin et al. MOLECULAR CELL
- Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
- (2008) Andrew Grimson et al. NATURE
- Gene deletion of inositol hexakisphosphate kinase 1 reveals inositol pyrophosphate regulation of insulin secretion, growth, and spermiogenesis
- (2008) R. Bhandari et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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