Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals

Tupaia small RNAs provide insights into function and evolution of RNAi-based transposon defense in mammals

(2015) David Rosenkranz et al.   RNA

PIWI Slicing and RNA Elements in Precursors Instruct Directional Primary piRNA Biogenesis

(2015) David Homolka et al.   Cell Reports

Piwi Proteins and piRNAs in Mammalian Oocytes and Early Embryos

(2015) Elke F. Roovers et al.   Cell Reports

piRNAs Are Associated with Diverse Transgenerational Effects on Gene and Transposon Expression in a Hybrid Dysgenic Syndrome of D. virilis

(2015) Alexandra A. Erwin et al.   PLoS Genetics

piRNAs from Pig Testis Provide Evidence for a Conserved Role of the Piwi Pathway in Post-Transcriptional Gene Regulation in Mammals

(2015) Daniel Gebert et al.   PLoS One

A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements

(2014) Hongseok Ha et al.   BMC GENOMICS

The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila

(2014) Fabio Mohn et al.   CELL

The HP1 Homolog Rhino Anchors a Nuclear Complex that Suppresses piRNA Precursor Splicing

(2014) Zhao Zhang et al.   CELL

Ancient Endo-siRNA Pathways Reveal New Tricks

(2014) Julie M. Claycomb   CURRENT BIOLOGY

Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing

(2014) Adrien Le Thomas et al.   GENES & DEVELOPMENT

Large Numbers of Novel miRNAs Originate from DNA Transposons and Are Coincident with a Large Species Radiation in Bats

(2014) Roy N. Platt et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of lncRNA repertoires and expression patterns in tetrapods

(2014) Anamaria Necsulea et al.   NATURE

Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution

(2014) Cosmas D Arnold et al.   NATURE GENETICS

Small RNA profiling and characterization of piRNA clusters in the adult testes of the common marmoset, a model primate

(2014) Takamasa Hirano et al.   RNA

A Transgenerational Process Defines piRNA Biogenesis in Drosophila virilis

(2014) Adrien Le Thomas et al.   Cell Reports

Euchromatic Transposon Insertions Trigger Production of Novel Pi- and Endo-siRNAs at the Target Sites in the Drosophila Germline

(2014) Sergey Shpiz et al.   PLoS Genetics

A Retrotransposon-Driven Dicer Isoform Directs Endogenous Small Interfering RNA Production in Mouse Oocytes

(2013) Matyas Flemr et al.   CELL

Structure-based whole-genome realignment reveals many novel noncoding RNAs

(2013) S. Will et al.   GENOME RESEARCH

Analysis of piRNA-Mediated Silencing of Active TEs in Drosophila melanogaster Suggests Limits on the Evolution of Host Genome Defense

(2013) Erin S. Kelleher et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes

(2013) Xin Zhiguo Li et al.   MOLECULAR CELL

The UCSC Genome Browser database: 2014 update

(2013) Donna Karolchik et al.   NUCLEIC ACIDS RESEARCH

MicroRNA and piRNA Profiles in Normal Human Testis Detected by Next Generation Sequencing

(2013) Qingling Yang et al.   PLoS One

PIWI proteins and PIWI-interacting RNAs function in Hydra somatic stem cells

(2013) C. E. Juliano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

(2013) Magali Soumillon et al.   Cell Reports

Active Transposition in Genomes

(2012) Cheng Ran Lisa Huang et al.   Annual Review of Genetics

A comparative profile of the microRNA transcriptome in immature and mature porcine testes using Solexa deep sequencing

(2012) Chuanjiang Lian et al.   FEBS Journal

Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines

(2012) H. Ishizu et al.   GENES & DEVELOPMENT

Birth and expression evolution of mammalian microRNA genes

(2012) J. Meunier et al.   GENOME RESEARCH

Paramutation in Drosophila linked to emergence of a piRNA-producing locus

(2012) Augustin de Vanssay et al.   NATURE

Selective Constraint on Copy Number Variation in Human Piwi-Interacting RNA Loci

(2012) David W. Gould et al.   PLoS One

An integrative approach to ortholog prediction for disease-focused and other functional studies

(2011) Yanhui Hu et al.   BMC BIOINFORMATICS

Molecular evolution under increasing transposable element burden in Drosophila: A speed limit on the evolutionary arms race

(2011) Dean M Castillo et al.   BMC EVOLUTIONARY BIOLOGY

piRNA Production Requires Heterochromatin Formation in Drosophila

(2011) Prashanth Rangan et al.   CURRENT BIOLOGY

Evolutionary diversity and developmental regulation of X-chromosome inactivation

(2011) Martin Escamilla-Del-Arenal et al.   HUMAN GENETICS

The etiology of preeclampsia: the role of the father

(2011) Gus Dekker et al.   JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Human piRNAs Are Under Selection in Africans and Repress Transposable Elements

(2011) S. Lukic et al.   MOLECULAR BIOLOGY AND EVOLUTION

A high-resolution map of human evolutionary constraint using 29 mammals

(2011) Kerstin Lindblad-Toh et al.   NATURE

Widespread expression of piRNA-like molecules in somatic tissues

(2011) Zheng Yan et al.   NUCLEIC ACIDS RESEARCH

Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood

(2010) M. Csuos   BIOINFORMATICS

Differential methylation of STOX1 in human placenta

(2010) Marie van Dijk et al.   Epigenetics

Small RNA-based silencing strategies for transposons in the process of invading Drosophila species

(2010) N. V. Rozhkov et al.   RNA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary

(2009) Colin D. Malone et al.   CELL

Collapse of Germline piRNAs in the Absence of Argonaute3 Reveals Somatic piRNAs in Flies

(2009) Chengjian Li et al.   CELL

The Drosophila HP1 Homolog Rhino Is Required for Transposon Silencing and piRNA Production by Dual-Strand Clusters

(2009) Carla Klattenhoff et al.   CELL

A Broadly Conserved Pathway Generates 3′UTR-Directed Primary piRNAs

(2009) Nicolas Robine et al.   CURRENT BIOLOGY

Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi

(2009) Nelson C Lau et al.   EMBO JOURNAL

Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

(2009) J. Lu et al.   GENOME RESEARCH

Detection of nonneutral substitution rates on mammalian phylogenies

(2009) K. S. Pollard et al.   GENOME RESEARCH

A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila

(2009) Kuniaki Saito et al.   NATURE

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution

(2009) R. Assis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes

(2008) S. Kuramochi-Miyagawa et al.   GENES & DEVELOPMENT

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

(2008) Andrew Grimson et al.   NATURE

Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

(2008) Oliver H. Tam et al.   NATURE