标题
Multi ‘omic data integration: A review of concepts, considerations, and approaches
作者
关键词
Omics, multi'omic integration, metagenomics, metatranscriptomics, proteomics, metabolomics
出版物
SEMINARS IN PERINATOLOGY
Volume 45, Issue 6, Pages 151456
出版商
Elsevier BV
发表日期
2021-06-17
DOI
10.1016/j.semperi.2021.151456
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Prospects and challenges of multi-omics data integration in toxicology
- (2020) Sebastian Canzler et al. ARCHIVES OF TOXICOLOGY
- Enteric Virome and Carcinogenesis in the Gut
- (2020) Cade Emlet et al. DIGESTIVE DISEASES AND SCIENCES
- The Progress of Multi-Omics Technologies: Determining Function in Lactic Acid Bacteria Using a Systems Level Approach
- (2020) Shane Thomas O’Donnell et al. Frontiers in Microbiology
- Sparse multiple co-Inertia analysis with application to integrative analysis of multi -Omics data
- (2020) Eun Jeong Min et al. BMC BIOINFORMATICS
- Bacterial colonization reprograms the neonatal gut metabolome
- (2020) Kyle Bittinger et al. Nature Microbiology
- Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources
- (2020) Tara Eicher et al. Metabolites
- Multi-omics integration in biomedical research – A metabolomics-centric review
- (2020) Maria A. Wörheide et al. ANALYTICA CHIMICA ACTA
- Potential applications of human viral metagenomics and reference materials: considerations for current and future viruses
- (2020) Tasha M. Santiago-Rodriguez et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome
- (2020) Ruben A.T. Mars et al. CELL
- A multi-omic analysis of birthweight in newborn cord blood reveals new underlying mechanisms related to cholesterol metabolism
- (2020) Rossella Alfano et al. METABOLISM-CLINICAL AND EXPERIMENTAL
- Network analysis of transcriptomic diversity amongst resident tissue macrophages and dendritic cells in the mouse mononuclear phagocyte system
- (2020) Kim M. Summers et al. PLOS BIOLOGY
- Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities
- (2020) Manuel Kleiner et al. Microbiome
- Multiomics-based strategies for taming intestinal inflammation in the neonate
- (2019) Josef Neu CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE
- Leveraging Human Microbiome Features to Diagnose and Stratify Children with Irritable Bowel Syndrome
- (2019) Emily B. Hollister et al. JOURNAL OF MOLECULAR DIAGNOSTICS
- Longitudinal multi-omics of host–microbe dynamics in prediabetes
- (2019) Wenyu Zhou et al. NATURE
- trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data
- (2019) Jianhong Ou et al. NATURE METHODS
- Associations between fungal and bacterial microbiota of airways and asthma endotypes
- (2019) Anukriti Sharma et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Human Virome and Disease: High-Throughput Sequencing for Virus Discovery, Identification of Phage-Bacteria Dysbiosis and Development of Therapeutic Approaches with Emphasis on the Human Gut
- (2019) Tasha M. Santiago-Rodriguez et al. Viruses-Basel
- Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community
- (2019) Farhana R. Pinu et al. Metabolites
- Advances and Challenges in Metatranscriptomic Analysis
- (2019) Migun Shakya et al. Frontiers in Genetics
- mRNA structure regulates protein expression through changes in functional half-life
- (2019) David M. Mauger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Making multi-omics data accessible to researchers
- (2019) Ana Conesa et al. Scientific Data
- Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities
- (2019) Duo Jiang et al. Frontiers in Genetics
- A review on human fecal metabolomics: Methods, applications and the human fecal metabolome database
- (2018) Naama Karu et al. ANALYTICA CHIMICA ACTA
- Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
- (2018) Ricard Argelaguet et al. Molecular Systems Biology
- Integrative omics for health and disease
- (2018) Konrad J. Karczewski et al. NATURE REVIEWS GENETICS
- Systematic analysis of protein turnover in primary cells
- (2018) Toby Mathieson et al. Nature Communications
- Inflammasomes in the gastrointestinal tract: infection, cancer and gut microbiota homeostasis
- (2018) Si Ming Man Nature Reviews Gastroenterology & Hepatology
- OUP accepted manuscript
- (2018) NUCLEIC ACIDS RESEARCH
- OUTRIDER: A Statistical Method for Detecting Aberrantly Expressed Genes in RNA Sequencing Data
- (2018) Felix Brechtmann et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Multiomics approach reveals metabolic changes in the heart at birth
- (2018) Jacquelyn M. Walejko et al. AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- An exposome perspective: Early-life events and immune development in a changing world
- (2017) Harald Renz et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Metaproteomics reveals functional differences in intestinal microbiota development of preterm infants
- (2017) Romy D. Zwittink et al. MOLECULAR & CELLULAR PROTEOMICS
- Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
- (2017) Rashmi Sinha et al. NATURE BIOTECHNOLOGY
- Towards standards for human fecal sample processing in metagenomic studies
- (2017) Paul I Costea et al. NATURE BIOTECHNOLOGY
- PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data
- (2017) Ying S Ting et al. NATURE METHODS
- Pathview Web: user friendly pathway visualization and data integration
- (2017) Weijun Luo et al. NUCLEIC ACIDS RESEARCH
- GenBank
- (2017) Dennis A Benson et al. NUCLEIC ACIDS RESEARCH
- The Reactome Pathway Knowledgebase
- (2017) Antonio Fabregat et al. NUCLEIC ACIDS RESEARCH
- HMDB 4.0: the human metabolome database for 2018
- (2017) David S Wishart et al. NUCLEIC ACIDS RESEARCH
- mixOmics: An R package for ‘omics feature selection and multiple data integration
- (2017) Florian Rohart et al. PLoS Computational Biology
- Multiplexed gene control reveals rapid mRNA turnover
- (2017) Antoine Baudrimont et al. Science Advances
- Degradation and half-life of DNA present in biomass from a genetically-modified organism during land application
- (2016) Mathew C. Halter et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Lipidomics for studying metabolism
- (2016) Xianlin Han Nature Reviews Endocrinology
- MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota
- (2016) Xu Zhang et al. Microbiome
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- Construction and Analysis of Functional Networks in the Gut Microbiome of Type 2 Diabetes Patients
- (2016) Lianshuo Li et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
- (2016) Se Jin Song et al. mSystems
- Using exposomics to assess cumulative risks and promote health
- (2015) Martyn T. Smith et al. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS
- The interactome challenge
- (2015) John D. Aitchison et al. JOURNAL OF CELL BIOLOGY
- moCluster: Identifying Joint Patterns Across Multiple Omics Data Sets
- (2015) Chen Meng et al. JOURNAL OF PROTEOME RESEARCH
- Inflammasomes: mechanism of action, role in disease and therapeutics
- (2015) Haitao Guo et al. NATURE MEDICINE
- Metabolomics Workbench: An international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools
- (2015) Manish Sud et al. NUCLEIC ACIDS RESEARCH
- Plasma metabolomic profiles enhance precision medicine for volunteers of normal health
- (2015) Lining Guo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease
- (2015) Xochitl C Morgan et al. GENOME BIOLOGY
- STATegra EMS: an Experiment Management System for complex next-generation omics experiments
- (2014) Rafael Hernández-de-Diego et al. BMC Systems Biology
- Role of the Microbiota in Immunity and Inflammation
- (2014) Yasmine Belkaid et al. CELL
- Compositional and Functional Features of the Gastrointestinal Microbiome and Their Effects on Human Health
- (2014) Emily B. Hollister et al. GASTROENTEROLOGY
- The first thousand days - intestinal microbiology of early life: establishing a symbiosis
- (2014) Harm Wopereis et al. PEDIATRIC ALLERGY AND IMMUNOLOGY
- Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders
- (2013) Elaine Y. Hsiao et al. CELL
- Initiation of mRNA decay in bacteria
- (2013) Soumaya Laalami et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
- (2013) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- VANTED v2: a framework for systems biology applications
- (2012) Hendrik Rohn et al. BMC Systems Biology
- Sizing up metatranscriptomics
- (2012) Mary Ann Moran et al. ISME Journal
- Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity
- (2012) Jorge Henao-Mejia et al. NATURE
- Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
- (2012) Christine Vogel et al. NATURE REVIEWS GENETICS
- Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease
- (2012) Alison R. Erickson et al. PLoS One
- Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
- (2011) Atanas Kamburov et al. BIOINFORMATICS
- NLRP6 Inflammasome Regulates Colonic Microbial Ecology and Risk for Colitis
- (2011) Eran Elinav et al. CELL
- Evaluation of High-Throughput Sequencing for Identifying Known and Unknown Viruses in Biological Samples
- (2011) Justine Cheval et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Global quantification of mammalian gene expression control
- (2011) Björn Schwanhäusser et al. NATURE
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
- (2011) Pelin Yilmaz et al. NATURE BIOTECHNOLOGY
- Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data
- (2010) F. Garcia-Alcalde et al. BIOINFORMATICS
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- Oral Carnitine Therapy and Insulin Resistance
- (2009) Ranganath Muniyappa HYPERTENSION
- Targeted capture and massively parallel sequencing of 12 human exomes
- (2009) Sarah B. Ng et al. NATURE
- Bioinformatic methods in NMR-based metabolic profiling
- (2009) Timothy M.D. Ebbels et al. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now