Initiation of mRNA decay in bacteria

CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea

(2013) Rotem Sorek et al.   Annual Review of Biochemistry

Emergence of the β-CASP ribonucleases: Highly conserved and ubiquitous metallo-enzymes involved in messenger RNA maturation and degradation

(2013) Zbigniew Dominski et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Ribonucleases in bacterial toxin–antitoxin systems

(2013) Gregory M. Cook et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Functions of DEAD-box proteins in bacteria: Current knowledge and pending questions

(2013) Isabelle Iost et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The social fabric of the RNA degradosome

(2013) Katarzyna J. Bandyra et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

An RNA Degradation Machine Sculpted by Ro Autoantigen and Noncoding RNA

(2013) Xinguo Chen et al.   CELL

Four-Dimensional Imaging of E. coli Nucleoid Organization and Dynamics in Living Cells

(2013) Jay K. Fisher et al.   CELL

A Decade of Riboswitches

(2013) Alexander Serganov et al.   CELL

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA

(2013) Y. Gopel et al.   GENES & DEVELOPMENT

Bacillus subtilis Mutants with Knockouts of the Genes Encoding Ribonucleases RNase Y and RNase J1 Are Viable, with Major Defects in Cell Morphology, Sporulation, and Competence

(2013) S. Figaro et al.   JOURNAL OF BACTERIOLOGY

Relaxed Cleavage Specificity within the RelE Toxin Family

(2013) N. Goeders et al.   JOURNAL OF BACTERIOLOGY

Multiple Roles of RNase Y in Streptococcus pyogenes mRNA Processing and Degradation

(2013) Z. Chen et al.   JOURNAL OF BACTERIOLOGY

Membrane Association via an Amino-terminal Amphipathic Helix Is Required for the Cellular Organization and Function of RNase II

(2013) Feng Lu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacterial Small RNA-based Negative Regulation: Hfq and Its Accomplices

(2013) Nicholas De Lay et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

CsrA activatesflhDCexpression by protectingflhDCmRNA from RNase E-mediated cleavage

(2013) Alexander V. Yakhnin et al.   MOLECULAR MICROBIOLOGY

Bacillus subtilis RNase Y Activity In Vivo Analysed by Tiling Microarrays

(2013) Soumaya Laalami et al.   PLoS One

Specificity of RppH-dependent RNA degradation in Bacillus subtilis

(2013) P.-k. Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates

(2013) J. Piton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Range of Vectors with a Stringent 5-Fluoroorotic Acid-Based Counterselection System for Generating Mutants by Allelic Replacement in Staphylococcus aureus

(2012) Peter Redder et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems

(2012) Tony Romeo et al.   ENVIRONMENTAL MICROBIOLOGY

Type II toxin/antitoxin MqsR/MqsA controls type V toxin/antitoxin GhoT/GhoS

(2012) Xiaoxue Wang et al.   ENVIRONMENTAL MICROBIOLOGY

A VapBC Toxin-Antitoxin Module Is a Posttranscriptional Regulator of Metabolic Flux in Mycobacteria

(2012) J. L. McKenzie et al.   JOURNAL OF BACTERIOLOGY

Second-Site Suppression of RNase E Essentiality by Mutation of the deaD RNA Helicase in Escherichia coli

(2012) M. Tamura et al.   JOURNAL OF BACTERIOLOGY

The Helical MreB Cytoskeleton in Escherichia coli MC1000/pLE7 Is an Artifact of the N-Terminal Yellow Fluorescent Protein Tag

(2012) Matthew T. Swulius et al.   JOURNAL OF BACTERIOLOGY

The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E

(2012) Katarzyna J. Bandyra et al.   MOLECULAR CELL

BsrG/SR4 from Bacillus subtilis- the first temperature-dependent type I toxin-antitoxin system

(2012) Natalie Jahn et al.   MOLECULAR MICROBIOLOGY

Influence of translation on RppH-dependent mRNA degradation inEscherichia coli

(2012) Jamie Richards et al.   MOLECULAR MICROBIOLOGY

RNase Y ofStaphylococcus aureusand its role in the activation of virulence genes

(2012) Gabriella Marincola et al.   MOLECULAR MICROBIOLOGY

The ribosome binding site of a mini-ORF protects a T3SS mRNA from degradation by RNase E

(2012) Patricia B. Lodato et al.   MOLECULAR MICROBIOLOGY

Superresolution imaging of ribosomes and RNA polymerase in live Escherichia coli cells

(2012) Somenath Bakshi et al.   MOLECULAR MICROBIOLOGY

A new type V toxin-antitoxin system where mRNA for toxin GhoT is cleaved by antitoxin GhoS

(2012) Xiaoxue Wang et al.   Nature Chemical Biology

RNase E: at the interface of bacterial RNA processing and decay

(2012) George A. Mackie   NATURE REVIEWS MICROBIOLOGY

Polyadenylation helps regulate functional tRNA levels in Escherichia coli

(2012) Bijoy K. Mohanty et al.   NUCLEIC ACIDS RESEARCH

Deregulation of poly(A) polymerase I in Escherichia coli inhibits protein synthesis and leads to cell death

(2012) B. K. Mohanty et al.   NUCLEIC ACIDS RESEARCH

A minimal bacterial RNase J-based degradosome is associated with translating ribosomes

(2012) Yulia Redko et al.   NUCLEIC ACIDS RESEARCH

Global analysis of mRNA stability in Mycobacterium tuberculosis

(2012) Tige R. Rustad et al.   NUCLEIC ACIDS RESEARCH

Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli

(2012) Yi-Chun Tsai et al.   NUCLEIC ACIDS RESEARCH

SR1—a small RNA with two remarkably conserved functions

(2012) Matthias Gimpel et al.   NUCLEIC ACIDS RESEARCH

Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity

(2012) O. N. Murashko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selectivity and self-assembly in the control of a bacterial toxin by an antitoxic noncoding RNA pseudoknot

(2012) F. L. Short et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual-acting riboswitch control of translation initiation and mRNA decay

(2012) M.-P. Caron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial type I toxin-antitoxin systems

(2012) Sabine Brantl   RNA Biology

An effort to make sense of antisense transcription in bacteria

(2012) Iñigo Lasa et al.   RNA Biology

Determination of ribonuclease sequence-specificity using Pentaprobes and mass spectrometry

(2012) J. L. McKenzie et al.   RNA

The crucial role of PNPase in the degradation of small RNAs that are not associated with Hfq

(2012) J. M. Andrade et al.   RNA

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Inhibition of specific gene expressions by protein-mediated mRNA interference

(2012) Yoshihiro Yamaguchi et al.   Nature Communications

The Essential Function of B. subtilis RNase III Is to Silence Foreign Toxin Genes

(2012) Sylvain Durand et al.   PLoS Genetics

Three Essential Ribonucleases—RNase Y, J1, and III—Control the Abundance of a Majority of Bacillus subtilis mRNAs

(2012) Sylvain Durand et al.   PLoS Genetics

Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression

(2012) Efthimia Lioliou et al.   PLoS Genetics

Toxin-Antitoxin Systems in Bacteria and Archaea

(2011) Yoshihiro Yamaguchi et al.   Annual Review of Genetics

Selective Translation of Leaderless mRNAs by Specialized Ribosomes Generated by MazF in Escherichia coli

(2011) Oliver Vesper et al.   CELL

RNA localization in bacteria

(2011) Kenneth C Keiler   CURRENT OPINION IN MICROBIOLOGY

Bacillus subtilisMazF-bs (EndoA) is a UACAU-specific mRNA interferase

(2011) Jung-Ho Park et al.   FEBS LETTERS

Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage

(2011) K. Prevost et al.   GENES & DEVELOPMENT

Decay of a Model mRNA in Bacillus subtilis by a Combination of RNase J1 5′ Exonuclease and RNase Y Endonuclease Activities

(2011) Shiyi Yao et al.   JOURNAL OF BACTERIOLOGY

Characterization of Components of the Staphylococcus aureus mRNA Degradosome Holoenzyme-Like Complex

(2011) C. M. Roux et al.   JOURNAL OF BACTERIOLOGY

RNase Y in Bacillus subtilis: a Natively Disordered Protein That Is the Functional Equivalent of RNase E from Escherichia coli

(2011) M. Lehnik-Habrink et al.   JOURNAL OF BACTERIOLOGY

5′ End-independent RNase J1 Endonuclease Cleavage ofBacillus subtilisModel RNA

(2011) Gintaras Deikus et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dissection of the Network of Interactions That Links RNA Processing with Glycolysis in the Bacillus subtilis Degradosome

(2011) Joseph A. Newman et al.   JOURNAL OF MOLECULAR BIOLOGY

An RNA Pyrophosphohydrolase Triggers 5′-Exonucleolytic Degradation of mRNA in Bacillus subtilis

(2011) Jamie Richards et al.   MOLECULAR CELL

Prospects for Riboswitch Discovery and Analysis

(2011) Ronald R. Breaker   MOLECULAR CELL

RNase Y is responsible for uncoupling the expression of translation factor IF3 from that of the ribosomal proteins L35 and L20 in Bacillus subtilis

(2011) Patrice Bruscella et al.   MOLECULAR MICROBIOLOGY

Mycobacterium smegmatis RNase J is a 5′-3′ exo-/endoribonuclease and both RNase J and RNase E are involved in ribosomal RNA maturation

(2011) Valerio Taverniti et al.   MOLECULAR MICROBIOLOGY

RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y

(2011) Martin Lehnik-Habrink et al.   MOLECULAR MICROBIOLOGY

Two pathways for RNase E action in Escherichia coli in vivo and bypass of its essentiality in mutants defective for Rho-dependent transcription termination

(2011) K. Anupama et al.   MOLECULAR MICROBIOLOGY

Roles of the 5′-phosphate sensor domain in RNase E

(2011) Stephen M. Garrey et al.   MOLECULAR MICROBIOLOGY

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A processed noncoding RNA regulates an altruistic bacterial antiviral system

(2011) Tim R Blower et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo

(2011) Peter Y Watson et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Small RNA Controls Expression of the Chitinase ChiA in Listeria monocytogenes

(2011) Jesper S. Nielsen et al.   PLoS One

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enteric virulence associated protein VapC inhibits translation by cleavage of initiator tRNA

(2011) K. S. Winther et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome

(2011) Maria W. Górna et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Regulation of virulence gene expression inStreptococcus pyogenes

(2011) Julia V. Bugrysheva et al.   RNA Biology

Role of polynucleotide phosphorylase in sRNA function in Escherichia coli

(2011) N. De Lay et al.   RNA

Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria

(2011) W. Wang et al.   SCIENCE

Processive Movement of MreB-Associated Cell Wall Biosynthetic Complexes in Bacteria

(2011) J. Dominguez-Escobar et al.   SCIENCE

Unusual, Dual Endo- and Exonuclease Activity in the Degradosome Explained by Crystal Structure Analysis of RNase J1

(2011) Joseph A. Newman et al.   STRUCTURE

Molecular Basis for the Recognition and Cleavage of RNA by the Bifunctional 5′–3′ Exo/Endoribonuclease RNase J

(2011) Audrey Dorléans et al.   STRUCTURE

MreB: pilot or passenger of cell wall synthesis?

(2011) Courtney L. White et al.   TRENDS IN MICROBIOLOGY

Virulence Gene Regulation by CvfA, a Putative RNase: the CvfA-Enolase Complex in Streptococcus pyogenes Links Nutritional Stress, Growth-Phase Control, and Virulence Gene Expression

(2010) S. O. Kang et al.   INFECTION AND IMMUNITY

Characterization of the RNA Degradosome of Pseudoalteromonas haloplanktis: Conservation of the RNase E-RhlB Interaction in the Gammaproteobacteria

(2010) S. Ait-Bara et al.   JOURNAL OF BACTERIOLOGY

Initiation of Decay of Bacillus subtilis rpsO mRNA by Endoribonuclease RNase Y

(2010) S. Yao et al.   JOURNAL OF BACTERIOLOGY

The Response Regulator SprE (RssB) Is Required for Maintaining Poly(A) Polymerase I-Degradosome Association during Stationary Phase

(2010) V. J. Carabetta et al.   JOURNAL OF BACTERIOLOGY

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

Regulation of morphological differentiation inS. coelicolorby RNase III (AbsB) cleavage of mRNA encoding the AdpA transcription factor

(2010) Weijing Xu et al.   MOLECULAR MICROBIOLOGY

Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli

(2010) Yoshiki Ikeda et al.   MOLECULAR MICROBIOLOGY

Spatial organization of the flow of genetic information in bacteria

(2010) Paula Montero Llopis et al.   NATURE

Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway

(2010) Sandra C. Viegas et al.   NUCLEIC ACIDS RESEARCH

An RNA degradosome assembly in Caulobacter crescentus

(2010) S. W. Hardwick et al.   NUCLEIC ACIDS RESEARCH

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

The PIN-domain ribonucleases and the prokaryotic VapBC toxin-antitoxin array

(2010) V. L. Arcus et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Unraveling new roles for minor components of the E. coli RNA degradosome

(2010) Vladimir R. Kaberdin et al.   RNA Biology

Small RNA-mediated regulation at the level of transcript stability

(2010) Marie-Pier Caron et al.   RNA Biology

The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome

(2010) M. W. Gorna et al.   RNA

Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations

(2010) S. Gottesman et al.   Cold Spring Harbor Perspectives in Biology

Bacterial/archaeal/organellar polyadenylation

(2010) Bijoy K. Mohanty et al.   Wiley Interdisciplinary Reviews-RNA

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus

(2010) Claudia Steglich et al.   GENOME BIOLOGY

Ribonucleases and bacterial virulence

(2010) Abidat Lawal et al.   Microbial Biotechnology

The Structural Basis for mRNA Recognition and Cleavage by the Ribosome-Dependent Endonuclease RelE

(2009) Cajetan Neubauer et al.   CELL

An overview of RNAs with regulatory functions in gram-positive bacteria

(2009) Pascale Romby et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis

(2009) Karen Shahbabian et al.   EMBO JOURNAL

Bacterial chromosome-encoded small regulatory RNAs

(2009) Sabine Brantl   Future Microbiology

Autogenous Regulation of Escherichia coli Polynucleotide Phosphorylase Expression Revisited

(2009) T. Carzaniga et al.   JOURNAL OF BACTERIOLOGY

Bacillus subtilis trpLeader RNA

(2009) Gintaras Deikus et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Substrate Binding and Active Site Residues in RNases E and G

(2009) Stephen M. Garrey et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Novel Activities of Glycolytic Enzymes inBacillus subtilis

(2009) Fabian M. Commichau et al.   MOLECULAR & CELLULAR PROTEOMICS

The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay inStreptococcus pyogenes

(2009) Julia V. Bugrysheva et al.   MOLECULAR MICROBIOLOGY

RNase E autoregulates its synthesis inEscherichia coliby binding directly to a stem-loop in therne5′ untranslated region

(2009) Alyssa Schuck et al.   MOLECULAR MICROBIOLOGY

Ribosomes initiating translation of thehbsmRNA protect it from 5′-to-3′ exoribonucleolytic degradation by RNase J1

(2009) Roula Daou-Chabo et al.   MOLECULAR MICROBIOLOGY

Rapid cleavage of RNA by RNase E in the absence of 5′ monophosphate stimulation

(2009) Louise Kime et al.   MOLECULAR MICROBIOLOGY

Bacillus subtilisribonucleases J1 and J2 form a complex with altered enzyme behaviour

(2009) Nathalie Mathy et al.   MOLECULAR MICROBIOLOGY

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

(2009) Verena Pfeiffer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes

(2009) Jesper Sejrup Nielsen et al.   NUCLEIC ACIDS RESEARCH

Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli

(2009) Dharam Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Subcellular localization of a bacterial regulatory RNA

(2009) J. H. Russell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair

(2009) Peter C. Fineran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Why and How Bacteria Localize Proteins

(2009) L. Shapiro et al.   SCIENCE

Quorum Sensing in Staphylococci

(2008) Richard P. Novick et al.   Annual Review of Genetics

Mycoplasma gallisepticum as the first analyzed bacterium in which RNA is not polyadenylated

(2008) Victoria Portnoy et al.   FEMS MICROBIOLOGY LETTERS

The Extracellular Death Factor: Physiological and Genetic Factors Influencing Its Production and Response in Escherichia coli

(2008) I. Kolodkin-Gal et al.   JOURNAL OF BACTERIOLOGY

RNaseE and RNA Helicase B Play Central Roles in the Cytoskeletal Organization of the RNA Degradosome

(2008) Aziz Taghbalout et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Reconstitution and Analysis of the Multienzyme Escherichia coli RNA Degradosome

(2008) Jonathan A.R. Worrall et al.   JOURNAL OF MOLECULAR BIOLOGY

Small Toxic Proteins and the Antisense RNAs That Repress Them

(2008) E. M. Fozo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Cleavage of mRNAs and role of tmRNA system under amino acid starvation in Escherichia coli

(2008) Xia Li et al.   MOLECULAR MICROBIOLOGY

Post-transcriptional control of Crp-cAMP by RNase LS inEscherichia coli

(2008) Akira Iwamoto et al.   MOLECULAR MICROBIOLOGY

Erythromycin-induced ribosome stalling and RNase J1-mediated mRNA processing inBacillus subtilis

(2008) Shiyi Yao et al.   MOLECULAR MICROBIOLOGY

mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale

(2008) Ulrike Mäder et al.   MOLECULAR MICROBIOLOGY

The bacterial enzyme RppH triggers messenger RNA degradation by 5′ pyrophosphate removal

(2008) Atilio Deana et al.   NATURE

Structural insights into the dual activity of RNase J

(2008) Inés Li de la Sierra-Gallay et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Translation affects YoeB and MazF messenger RNA interferase activities by different mechanisms

(2008) M. Christensen-Dalsgaard et al.   NUCLEIC ACIDS RESEARCH

Spatial organization of a replicating bacterial chromosome

(2008) I. A. Berlatzky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

(2008) A. Schein et al.   RNA

The Crystal Structure of the Escherichia coli RNase E Apoprotein and a Mechanism for RNA Degradation

(2008) Daniel J. Koslover et al.   STRUCTURE

Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates

(2003) Sandra Sousa et al.   MOLECULAR MICROBIOLOGY