Metaproteomics reveals functional differences in intestinal microbiota development of preterm infants

Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

(2016) Christopher J. Stewart et al.   Microbiome

Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission

(2015) Cristina Rodriguez et al.   BMC MICROBIOLOGY

Antibiotics, Pediatric Dysbiosis, and Disease

(2015) Pajau Vangay et al.   Cell Host & Microbe

Intestinal Microbiota Development in Preterm Neonates and Effect of Perinatal Antibiotics

(2015) Silvia Arboleya et al.   JOURNAL OF PEDIATRICS

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Intestinal microbiota and its relationship with necrotizing enterocolitis

(2015) Ravi Mangal Patel et al.   PEDIATRIC RESEARCH

Factors influencing gastrointestinal tract and microbiota immune interaction in preterm infants

(2015) María Carmen Collado et al.   PEDIATRIC RESEARCH

Metaproteomics reveals functional shifts in microbial and human proteins during a preterm infant gut colonization case

(2015) Jacque C. Young et al.   PROTEOMICS

Preterm gut microbiota and metabolome following discharge from intensive care

(2015) Christopher J. Stewart et al.   Scientific Reports

Late-Onset Bloodstream Infection and Perturbed Maturation of the Gastrointestinal Microbiota in Premature Infants

(2015) Alexander G. Shaw et al.   PLoS One

Early Empiric Antibiotic Use in Preterm Infants Is Associated with Lower Bacterial Diversity and Higher Relative Abundance of Enterobacter

(2014) Corryn Greenwood et al.   JOURNAL OF PEDIATRICS

The More the Merrier? Reduced Fecal Microbiota Diversity in Preterm Infants Treated with Antibiotics

(2014) W. Florian Fricke   JOURNAL OF PEDIATRICS

The first thousand days - intestinal microbiology of early life: establishing a symbiosis

(2014) Harm Wopereis et al.   PEDIATRIC ALLERGY AND IMMUNOLOGY

Patterned progression of bacterial populations in the premature infant gut

(2014) P. S. La Rosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intestinal microbiota during early life – impact on health and disease

(2014) Lotta Nylund et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Non-invasive analysis of intestinal development in preterm and term infants using RNA-Sequencing

(2014) Jason M. Knight et al.   Scientific Reports

Development of the preterm infant gut microbiome: a research priority

(2014) Maureen W Groer et al.   Microbiome

Bacterial Diversity in Meconium of Preterm Neonates and Evolution of Their Fecal Microbiota during the First Month of Life

(2013) Laura Moles et al.   PLoS One

The effect of enteral supplementation of specific neutral and acidic oligosaccharides on the faecal microbiota and intestinal microenvironment in preterm infants

(2012) E. A. M. Westerbeek et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Intestinal proteome changes during infant necrotizing enterocolitis

(2012) Pingping Jiang et al.   PEDIATRIC RESEARCH

Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions

(2012) Carolin A. Kolmeder et al.   PLoS One

Improved Detection of Bifidobacteria with Optimised 16S rRNA-Gene Based Pyrosequencing

(2012) Kathleen Sim et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Establishment and development of intestinal microbiota in preterm neonates

(2011) Silvia Arboleya et al.   FEMS MICROBIOLOGY ECOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Filter-aided sample preparation with dimethyl labeling to identify and quantify milk fat globule membrane proteins

(2011) Jing Lu et al.   Journal of Proteomics

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Amoxicillin treatment modifies the composition of Bifidobacterium species in infant intestinal microbiota

(2010) I. Mangin et al.   ANAEROBE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Dynamics and Clinical Evolution of Bacterial Gut Microflora in Extremely Premature Patients

(2010) Aurelien Jacquot et al.   JOURNAL OF PEDIATRICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early life: gut microbiota and immune development in infancy

(2010) R. Martin et al.   Beneficial Microbes

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY