Nitrate-responsive transcriptome analysis reveals additional genes/processes and associated traits viz. height, tillering, heading date, stomatal density and yield in japonica rice

Nitrogen Use Efficiency Phenotype and Associated Genes: Roles of Germination, Flowering, Root/Shoot Length and Biomass

(2021) Narendra Sharma et al.   Frontiers in Plant Science

Nitrogen and Stem Development: A Puzzle Still to Be Solved

(2021) Lucas Anjos Souza et al.   Frontiers in Plant Science

Meta-Analysis of Yield-Related and N-Responsive Genes Reveals Chromosomal Hotspots, Key Processes and Candidate Genes for Nitrogen-Use Efficiency in Rice

(2021) Supriya Kumari et al.   Frontiers in Plant Science

Unravelling the Roles of Nitrogen Nutrition in Plant Disease Defences

(2020) Yuming Sun et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Enhanced sustainable green revolution yield via nitrogen-responsive chromatin modulation in rice

(2020) Kun Wu et al.   SCIENCE

OsFPFL4 is Involved in the Root and Flower Development by Affecting Auxin Levels and ROS Accumulation in Rice (Oryza sativa)

(2020) Yaomin Guo et al.   Rice

Re-epithelialization and immune cell behaviour in an ex vivo human skin model

(2020) Ana Rakita et al.   Scientific Reports

Internal ammonium excess induces ROS-mediated reactions and causes carbon scarcity in rice

(2020) Shunying Yang et al.   BMC PLANT BIOLOGY

Transcriptomic and physiological analyses of rice seedlings under different nitrogen supplies provide insight into the regulation involved in axillary bud outgrowth

(2020) Rongna Wang et al.   BMC PLANT BIOLOGY

Nitrate 2020: Thirty years from transport to signaling networks

(2020) Elena A Vidal et al.   PLANT CELL

Genetic diversity for nitrogen use efficiency in Arabidopsis thaliana

(2019) Rhonda C. Meyer et al.   PLANTA

A Transcription Factor, OsMADS57, Regulates Long-distance Nitrate Transport and Root Elongation

(2019) Shuangjie Huang et al.   PLANT PHYSIOLOGY

Rice Os DOF 15 contributes to ethylene‐inhibited primary root elongation under salt stress

(2019) Hua Qin et al.   NEW PHYTOLOGIST

An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Differential Regulation of Carbon and Nitrogen Metabolism in Response to Nitrogen Availability

(2019) Wei Xin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Mutation in Mg-Protoporphyrin IX Monomethyl Ester Cyclase Causes Yellow and Spotted Leaf Phenotype in Rice

(2019) Chun Li et al.   PLANT MOLECULAR BIOLOGY REPORTER

Gibberellic acid inhibition of tillering in tall fescue involving crosstalks with cytokinins and transcriptional regulation of genes controlling axillary bud outgrowth

(2019) Lili Zhuang et al.   PLANT SCIENCE

Nitrate Transport, Signaling, and Use Efficiency

(2018) Ya-Yun Wang et al.   Annual Review of Plant Biology

Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies

(2018) Sang-Yoon Shin et al.   BMC GENOMICS

Plant cell surface receptor-mediated signaling – a common theme amid diversity

(2018) Yunxia He et al.   JOURNAL OF CELL SCIENCE

Rice Functional Genomics Research: Past Decade and Future

(2018) Yan Li et al.   Molecular Plant

The S-Type Anion Channel ZmSLAC1 Plays Essential Roles in Stomatal Closure by Mediating Nitrate Efflux in Maize

(2018) Guo-Ning Qi et al.   PLANT AND CELL PHYSIOLOGY

The trans and cis zeatin isomers play different roles in regulating growth inhibition induced by high nitrate concentrations in maize

(2018) Maite Lacuesta et al.   PLANT GROWTH REGULATION

Ornithine δ-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice

(2018) Changzhen Liu et al.   PLANT JOURNAL

OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots

(2018) Valarmathi Ramanathan et al.   Scientific Reports

AtTrm5a catalyses 1-methylguanosine and 1-methylinosine formation on tRNAs and is important for vegetative and reproductive growth in Arabidopsis thaliana

(2018) Xiaohuan Jin et al.   NUCLEIC ACIDS RESEARCH

Transcriptome monitoring visualizes growth stage-dependent nutrient status dynamics in rice under field conditions

(2018) Hinako Takehisa et al.   PLANT JOURNAL

Phenotyping for Nitrogen Use Efficiency: Rice Genotypes Differ in N-Responsive Germination, Oxygen Consumption, Seed Urease Activities, Root Growth, Crop Duration, and Yield at Low N

(2018) Narendra Sharma et al.   Frontiers in Plant Science

Nitrogen use efficiency in crops: lessons from Arabidopsis and rice

(2017) Hua Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Construction and application of functional gene modules to regulatory pathways in rice

(2017) Woo-Jong Hong et al.   JOURNAL OF PLANT BIOLOGY

Spatio-temporal dynamics in global rice gene expression ( Oryza sativa  L.) in response to high ammonium stress

(2017) Li Sun et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification of early ammonium nitrate-responsive genes in rice roots

(2017) Hsiu-Chun Yang et al.   Scientific Reports

Genome-wide transcriptome analysis of expression in rice seedling roots in response to supplemental nitrogen

(2016) Anil Kumar Nalini Chandran et al.   JOURNAL OF PLANT PHYSIOLOGY

Disruption of OsSULTR3;3 reduces phytate and phosphorus concentrations and alters the metabolite profile in rice grains

(2016) Haijun Zhao et al.   NEW PHYTOLOGIST

Hormones and nitrate: a two-way connection

(2016) Gabriel Krouk   PLANT MOLECULAR BIOLOGY

Nucleolar DEAD-Box RNA Helicase TOGR1 Regulates Thermotolerant Growth as a Pre-rRNA Chaperone in Rice

(2016) Dong Wang et al.   PLoS Genetics

Transcriptome analysis of nitrogen-starvation-responsive genes in rice

(2015) Wenzhu Yang et al.   BMC PLANT BIOLOGY

Flowering time regulation in crops — what did we learn from Arabidopsis?

(2015) Martina Blümel et al.   CURRENT OPINION IN BIOTECHNOLOGY

RNA-Seq analysis of differentially expressed genes in rice under varied nitrogen supplies

(2015) Shun-ying Yang et al.   GENE

Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL)

(2015) Cornelia M. Hooper et al.   PLANT AND CELL PHYSIOLOGY

Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice

(2015) Mariana Obertello et al.   PLANT PHYSIOLOGY

Coexpression Network Analysis of Macronutrient Deficiency Response Genes in Rice

(2015) Hinako Takehisa et al.   Rice

MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice

(2015) Chunyan Yu et al.   PLoS One

Metabolic and co-expression network-based analyses associated with nitrate response in rice

(2014) Viktoriya Coneva et al.   BMC GENOMICS

Nitrogen limitation and high density responses in rice suggest a role for ethylene under high density stress

(2014) Maksym Misyura et al.   BMC GENOMICS

Additional Nitrogen Fertilization at Heading Time of Rice Down-Regulates Cellulose Synthesis in Seed Endosperm

(2014) Keiko Midorikawa et al.   PLoS One

Nitrite Promotes the Growth and Decreases the Lignin Content of indica Rice Calli: A Comprehensive Transcriptome Analysis of Nitrite-Responsive Genes during In Vitro Culture of Rice

(2014) Xin Wang et al.   PLoS One

Genome-Wide Identification of the Maize Calcium-Dependent Protein Kinase Gene Family

(2013) Pengda Ma et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Physiological analysis of nitrogen-efficient rice overexpressing alanine aminotransferase under different N regimes

(2013) Perrin H. Beatty et al.   Botany

A Nitrate-Inducible GARP Family Gene Encodes an Auto-Repressible Transcriptional Repressor in Rice

(2013) Naoya Sawaki et al.   PLANT AND CELL PHYSIOLOGY

Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors

(2012) Priyanka Paul et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Transcriptome response to nitrogen starvation in rice

(2012) Hongmei Cai et al.   JOURNAL OF BIOSCIENCES

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data

(2010) Robert C McLeay et al.   BMC BIOINFORMATICS

Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation

(2010) Hiroyuki Tsuji et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human

(2010) Pavan Umate et al.   PLANT MOLECULAR BIOLOGY

Loss of cytosolic fructose-1,6-bisphosphatase limits photosynthetic sucrose synthesis and causes severe growth retardations in rice (Oryza sativa)

(2008) SANG-KYU LEE et al.   PLANT CELL AND ENVIRONMENT