Metabolic and co-expression network-based analyses associated with nitrate response in rice

The stay-green trait

(2014) Howard Thomas et al.   JOURNAL OF EXPERIMENTAL BOTANY

Heterotrimeric G proteins regulate nitrogen-use efficiency in rice

(2014) Hongying Sun et al.   NATURE GENETICS

Functional Characterization of the Rice UDP-glucose 4-epimerase 1, OsUGE1: A Potential Role in Cell Wall Carbohydrate Partitioning during Limiting Nitrogen Conditions

(2014) David R. Guevara et al.   PLoS One

Correlated mRNAs and miRNAs from co-expression and regulatory networks affect porcine muscle and finally meat properties

(2013) Siriluck Ponsuksili et al.   BMC GENOMICS

Systems Genetics of Environmental Response in the Mature Wheat Embryo

(2013) Jesse D. Munkvold et al.   GENETICS

Nitrogen deprivation promotesPopulusroot growth through global transcriptome reprogramming and activation of hierarchical genetic networks

(2013) Hairong Wei et al.   NEW PHYTOLOGIST

Long-term fate of nitrate fertilizer in agricultural soils

(2013) M. Sebilo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots

(2013) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Nitrogen Assimilation and Use Efficiency

(2012) Guohua Xu et al.   Annual Review of Plant Biology

Transcriptome response to nitrogen starvation in rice

(2012) Hongmei Cai et al.   JOURNAL OF BIOSCIENCES

The cyclic nucleotide cGMP is involved in plant hormone signalling and alters phosphorylation of Arabidopsis thaliana root proteins

(2012) Jean Charles Isner et al.   JOURNAL OF EXPERIMENTAL BOTANY

Can genetic variability for nitrogen metabolism in the developing ear of maize be exploited to improve yield?

(2012) Rafael A. Cañas et al.   NEW PHYTOLOGIST

Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings

(2011) Wolfgang R. Engelsberger et al.   PLANT JOURNAL

Gene Expression Biomarkers Provide Sensitive Indicators of in Planta Nitrogen Status in Maize

(2011) X. S. Yang et al.   PLANT PHYSIOLOGY

Arabidopsis Roots and Shoots Show Distinct Temporal Adaptation Patterns toward Nitrogen Starvation

(2011) A. Krapp et al.   PLANT PHYSIOLOGY

The biochemistry of nitrogen mobilization: purine ring catabolism

(2011) Andrea K. Werner et al.   TRENDS IN PLANT SCIENCE

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate

(2011) Gabriel Krouk et al.   GENOME BIOLOGY

Adenyl cyclases and cAMP in plant signaling - past and present

(2010) Chris Gehring   Cell Communication and Signaling

RNA interference-mediated suppression of xanthine dehydrogenase reveals the role of purine metabolism in drought tolerance in Arabidopsis

(2010) Shunsuke Watanabe et al.   FEBS LETTERS

Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency

(2010) S. Kant et al.   JOURNAL OF EXPERIMENTAL BOTANY

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

(2010) Y. Sato et al.   NUCLEIC ACIDS RESEARCH

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Molecular analysis of ureide accumulation under drought stress in Phaseolus vulgaris L.

(2010) JOSEFA M. ALAMILLO et al.   PLANT CELL AND ENVIRONMENT

Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution

(2010) Umar Masood Quraishi et al.   PLANT JOURNAL

Isoforms of plasma membrane H+-ATPase in rice root and shoot are differentially induced by starvation and resupply of NO3− or NH4+

(2010) Marcus Vinícius Loss Sperandio et al.   PLANT SCIENCE

Large-scale analysis of phosphorylated proteins in maize leaf

(2010) Ying-Dong Bi et al.   PLANTA

CHL1 Functions as a Nitrate Sensor in Plants

(2009) Cheng-Hsun Ho et al.   CELL

ATP Binding to the C Terminus of theArabidopsis thalianaNitrate/Proton Antiporter, AtCLCa, Regulates Nitrate Transport into Plant Vacuoles

(2009) Alexis De Angeli et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase

(2009) Perrin H. Beatty et al.   PLANT BIOTECHNOLOGY JOURNAL

Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling

(2009) YONG-MEI BI et al.   PLANT CELL AND ENVIRONMENT

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

QTL and QTL × Environment Effects on Agronomic and Nitrogen Acquisition Traits in Rice

(2008) Senapathy Senthilvel et al.   Journal of Integrative Plant Biology

Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression ofalanine aminotransferase

(2008) Ashok K. Shrawat et al.   PLANT BIOTECHNOLOGY JOURNAL

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation inArabidopsis

(2008) HENDRIK TSCHOEP et al.   PLANT CELL AND ENVIRONMENT

A critical role for ureides in dark and senescence-induced purine remobilization is unmasked in the Atxdh1 Arabidopsis mutant

(2008) Galina Brychkova et al.   PLANT JOURNAL

AtCIPK8, a CBL-interacting protein kinase, regulates the low-affinity phase of the primary nitrate response

(2008) Heng-Cheng Hu et al.   PLANT JOURNAL

Geometric Interpretation of Gene Coexpression Network Analysis

(2008) Steve Horvath et al.   PLoS Computational Biology