An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Differential Regulation of Carbon and Nitrogen Metabolism in Response to Nitrogen Availability

Concurrent isotope-assisted metabolic flux analysis and transcriptome profiling reveal responses of poplar cells to altered nitrogen and carbon supply

(2018) Xiaofeng Zhang et al.   PLANT JOURNAL

Transcriptome Analysis of Two Rice Varieties Contrasting for Nitrogen Use Efficiency under Chronic N Starvation Reveals Differences in Chloroplast and Starch Metabolism-Related Genes

(2018) Subodh Sinha et al.   Genes

Postharvest metabolomic changes in Pyrus ussuriensis Maxim. wild accession ‘Zaoshu Shanli’

(2018) Jiayu Xu et al.   JOURNAL OF SEPARATION SCIENCE

Nitrogen use efficiency in crops: lessons from Arabidopsis and rice

(2017) Hua Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolic Flux Redirection and Transcriptomic Reprogramming in the Albino Tea Cultivar ‘Yu-Jin-Xiang’ with an Emphasis on Catechin Production

(2017) Guo-Feng Liu et al.   Scientific Reports

Transcriptomic response of durum wheat to nitrogen starvation

(2017) Pasquale L. Curci et al.   Scientific Reports

Transcriptome sequencing and metabolite analysis for revealing the blue flower formation in waterlily

(2016) Qian Wu et al.   BMC GENOMICS

Network analysis of the metabolome and transcriptome reveals novel regulation of potato pigmentation

(2016) Kyoungwon Cho et al.   JOURNAL OF EXPERIMENTAL BOTANY

Rice Ferredoxin-Dependent Glutamate Synthase Regulates Nitrogen–Carbon Metabolomes and Is Genetically Differentiated between japonica and indica Subspecies

(2016) Xiaolu Yang et al.   Molecular Plant

Nitrogen-utilization efficiency in rice: an analysis at leaf, shoot, and whole-plant level

(2016) Takahiro Ogawa et al.   PLANT AND SOIL

Dynamic metabolic and transcriptomic profiling of methyl jasmonate-treated hairy roots reveals synthetic characters and regulators of lignan biosynthesis inIsatis indigoticaFort

(2016) Lei Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles

(2016) Ulrike Glaubitz et al.   PLANT CELL AND ENVIRONMENT

Transcriptome analysis of nitrogen-starvation-responsive genes in rice

(2015) Wenzhu Yang et al.   BMC PLANT BIOLOGY

Root and shoot traits for rice varieties with higher grain yield and higher nitrogen use efficiency at lower nitrogen rates application

(2015) Chengxin Ju et al.   FIELD CROPS RESEARCH

The Stable Level of Glutamine synthetase 2 Plays an Important Role in Rice Growth and in Carbon-Nitrogen Metabolic Balance

(2015) Aili Bao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Plant cell wall extensibility: connecting plant cell growth with cell wall structure, mechanics, and the action of wall-modifying enzymes

(2015) Daniel J. Cosgrove   JOURNAL OF EXPERIMENTAL BOTANY

Global poplar root and leaf transcriptomes reveal links between growth and stress responses under nitrogen starvation and excess

(2015) Jie Luo et al.   TREE PHYSIOLOGY

Tyr-301 Phosphorylation Inhibits Pyruvate Dehydrogenase by Blocking Substrate Binding and Promotes the Warburg Effect

(2014) Jun Fan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcriptome sequencing and metabolite analysis reveals the role of delphinidin metabolism in flower colour in grape hyacinth

(2014) Qian Lou et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Regulation of Photosynthetic Structure and Function during Nitrogen Deprivation inChlamydomonas reinhardtii

(2014) Matthew T. Juergens et al.   PLANT PHYSIOLOGY

Deciphering the Mechanism of β-Aminobutyric Acid-Induced Resistance in Wheat to the Grain Aphid, Sitobion avenae

(2014) He-He Cao et al.   PLoS One

Accumulated Expression Level of Cytosolic Glutamine Synthetase 1 Gene (OsGS1;1 or OsGS1;2) Alter Plant Development and the Carbon-Nitrogen Metabolic Status in Rice

(2014) Aili Bao et al.   PLoS One

Reflections on univariate and multivariate analysis of metabolomics data

(2013) Edoardo Saccenti et al.   Metabolomics

Liquid chromatography quadrupole time-of-flight mass spectrometry characterization of metabolites guided by the METLIN database

(2013) Zheng-Jiang Zhu et al.   Nature Protocols

Covalent bond formation between amino acids and lignin: Cross-coupling between proteins and lignin

(2013) Fang Cong et al.   PHYTOCHEMISTRY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Plant Nitrogen Assimilation and Use Efficiency

(2012) Guohua Xu et al.   Annual Review of Plant Biology

Transcriptome response to nitrogen starvation in rice

(2012) Hongmei Cai et al.   JOURNAL OF BIOSCIENCES

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

HMDB 3.0—The Human Metabolome Database in 2013

(2012) David S. Wishart et al.   NUCLEIC ACIDS RESEARCH

Maize Source Leaf Adaptation to Nitrogen Deficiency Affects Not Only Nitrogen and Carbon Metabolism But Also Control of Phosphate Homeostasis

(2012) U. Schluter et al.   PLANT PHYSIOLOGY

Systems Biology for Enhanced Plant Nitrogen Nutrition

(2012) R. A. Gutierrez   SCIENCE

Nitrogen-efficient rice cultivars can reduce nitrate pollution

(2011) Khalid Rehman Hakeem et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Metabolomic approaches toward understanding nitrogen metabolism in plants

(2011) M. Kusano et al.   JOURNAL OF EXPERIMENTAL BOTANY

Respiration and nitrogen assimilation: targeting mitochondria-associated metabolism as a means to enhance nitrogen use efficiency

(2011) C. H. Foyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Why Nitrogen Use Efficiency Decreases Under High Nitrogen Supply in Rice (Oryza sativa L.) Seedlings

(2011) Yong Li et al.   JOURNAL OF PLANT GROWTH REGULATION

Introduction of the ZmDof1 gene into rice enhances carbon and nitrogen assimilation under low-nitrogen conditions

(2011) Tomohiro Kurai et al.   PLANT BIOTECHNOLOGY JOURNAL

Arabidopsis Roots and Shoots Show Distinct Temporal Adaptation Patterns toward Nitrogen Starvation

(2011) A. Krapp et al.   PLANT PHYSIOLOGY

Understanding plant response to nitrogen limitation for the improvement of crop nitrogen use efficiency

(2010) S. Kant et al.   JOURNAL OF EXPERIMENTAL BOTANY

Metabolic and Signaling Aspects Underpinning the Regulation of Plant Carbon Nitrogen Interactions

(2010) Adriano Nunes-Nesi et al.   Molecular Plant

In folio isotopic tracing demonstrates that nitrogen assimilation into glutamate is mostly independent from current CO2 assimilation in illuminated leaves of Brassica napus

(2010) Paul P. G. Gauthier et al.   NEW PHYTOLOGIST

Not just a circle: flux modes in the plant TCA cycle

(2010) Lee J. Sweetlove et al.   TRENDS IN PLANT SCIENCE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae

(2009) S. Imamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The influence of nitrogen and phosphorus supply and genotype on mesophyll conductance limitations to photosynthesis in Pinus radiata

(2009) H. E. Bown et al.   TREE PHYSIOLOGY

The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis

(2008) Loren Castaings et al.   PLANT JOURNAL