标题
Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer
作者
关键词
-
出版物
NATURE BIOTECHNOLOGY
Volume 40, Issue 2, Pages 209-217
出版商
Springer Science and Business Media LLC
发表日期
2021-10-19
DOI
10.1038/s41587-021-01021-3
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Pan-cancer analysis of whole genomes
- (2020) NATURE
- Pervasive functional translation of noncanonical human open reading frames
- (2020) Jin Chen et al. SCIENCE
- Identification of Tumor Antigens Among the HLA Peptidomes of Glioblastoma Tumors and Plasma
- (2019) Bracha Shraibman et al. MOLECULAR & CELLULAR PROTEOMICS
- Comment on “A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands”
- (2019) Zach Rolfs et al. Science Immunology
- A large peptidome dataset improves HLA class I epitope prediction across most of the human population
- (2019) Siranush Sarkizova et al. NATURE BIOTECHNOLOGY
- Accurate annotation of human protein-coding small open reading frames
- (2019) Thomas F. Martinez et al. Nature Chemical Biology
- The Cancer Genome Atlas: Creating Lasting Value beyond Its Data
- (2018) Carolyn Hutter et al. CELL
- SnapShot: TCGA-Analyzed Tumors
- (2018) Amy Blum et al. CELL
- Improved Ribo-seq enables identification of cryptic translation events
- (2018) Florian Erhard et al. NATURE METHODS
- Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome
- (2018) Roman Mylonas et al. MOLECULAR & CELLULAR PROTEOMICS
- Actively personalized vaccination trial for newly diagnosed glioblastoma
- (2018) Norbert Hilf et al. NATURE
- Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial
- (2018) Derin B. Keskin et al. NATURE
- GENCODE reference annotation for the human and mouse genomes
- (2018) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
- Noncoding regions are the main source of targetable tumor-specific antigens
- (2018) Céline M. Laumont et al. Science Translational Medicine
- Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction
- (2017) Jennifer G. Abelin et al. IMMUNITY
- NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data
- (2017) Vanessa Jurtz et al. JOURNAL OF IMMUNOLOGY
- Personalized RNA mutanome vaccines mobilize poly-specific therapeutic immunity against cancer
- (2017) Ugur Sahin et al. NATURE
- An immunogenic personal neoantigen vaccine for patients with melanoma
- (2017) Patrick A. Ott et al. NATURE
- Widespread Translational Remodeling during Human Neuronal Differentiation
- (2017) John D. Blair et al. Cell Reports
- A large fraction of HLA class I ligands are proteasome-generated spliced peptides
- (2016) Juliane Liepe et al. SCIENCE
- Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames
- (2016) Céline M. Laumont et al. Nature Communications
- Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry
- (2016) Michal Bassani-Sternberg et al. Nature Communications
- Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling
- (2016) Anil Raj et al. eLife
- A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation
- (2015) Alexander P. Fields et al. MOLECULAR CELL
- Non-coding recurrent mutations in chronic lymphocytic leukaemia
- (2015) Xose S. Puente et al. NATURE
- Mutations driving CLL and their evolution in progression and relapse
- (2015) Dan A. Landau et al. NATURE
- The landscape of long noncoding RNAs in the human transcriptome
- (2015) Matthew K Iyer et al. NATURE GENETICS
- The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
- (2015) et al. SCIENCE
- Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins
- (2015) Zhe Ji et al. eLife
- Expression of Cancer/Testis Antigens is Correlated with Improved Survival in Glioblastoma
- (2015) Marcelo R.P. Freitas et al. Oncotarget
- Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia
- (2014) M. Rajasagi et al. BLOOD
- Ribosome Profiling Reveals a Cell-Type-Specific Translational Landscape in Brain Tumors
- (2014) C. Gonzalez et al. JOURNAL OF NEUROSCIENCE
- Proteogenomics: concepts, applications and computational strategies
- (2014) Alexey I Nesvizhskii NATURE METHODS
- Ribosome profiling reveals resemblance between long non-coding RNAs and 5′ leaders of coding RNAs
- (2013) Guo-Liang Chew et al. DEVELOPMENT
- Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
- (2013) P. G. Ferreira et al. GENOME RESEARCH
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Molecular Characterization of Chronic Lymphocytic Leukemia Patients with a High Number of Losses in 13q14
- (2012) Ana Eugenia Rodríguez et al. PLoS One
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
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