A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development
出版年份 2021 全文链接
标题
A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development
作者
关键词
retrotransposons, transposons, mouse, preimplantation embryos, Cdk2ap1, mammals, promoters, implantation, cell proliferation, Cdk2
出版物
CELL
Volume 184, Issue 22, Pages 5541-5558.e22
出版商
Elsevier BV
发表日期
2021-10-13
DOI
10.1016/j.cell.2021.09.021
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Vertebrate Lineages Exhibit Diverse Patterns of Transposable Element Regulation and Expression across Tissues
- (2020) Giulia I M Pasquesi et al. Genome Biology and Evolution
- Transposable elements, circular RNAs and mitochondrial transcription in age-related genomic regulation
- (2020) Juan I. Bravo et al. DEVELOPMENT
- Measuring and interpreting transposable element expression
- (2020) Sophie Lanciano et al. NATURE REVIEWS GENETICS
- A Field Guide to Eukaryotic Transposable Elements
- (2020) Jonathan N. Wells et al. Annual Review of Genetics
- A single-cell transcriptome atlas of marsupial embryogenesis and X inactivation
- (2020) Shantha K. Mahadevaiah et al. NATURE
- Transposable elements drive widespread expression of oncogenes in human cancers
- (2019) Hyo Sik Jang et al. NATURE GENETICS
- Mouse germ line mutations due to retrotransposon insertions
- (2019) Liane Gagnier et al. Mobile DNA
- WashU Epigenome Browser update 2019
- (2019) Daofeng Li et al. NUCLEIC ACIDS RESEARCH
- CRISPR-READI: Efficient Generation of Knockin Mice by CRISPR RNP Electroporation and AAV Donor Infection
- (2019) Sean Chen et al. Cell Reports
- Host–transposon interactions: conflict, cooperation, and cooption
- (2019) Rachel L Cosby et al. GENES & DEVELOPMENT
- Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements
- (2019) Nicky Chung et al. Mobile DNA
- Transposable Elements, Inflammation, and Neurological Disease
- (2019) Aurian Saleh et al. Frontiers in Neurology
- CDK2 kinase activity is a regulator of male germ cell fate
- (2019) Priti Singh et al. DEVELOPMENT
- Transposable element expression in tumors is associated with immune infiltration and increased antigenicity
- (2019) Yu Kong et al. Nature Communications
- The Neuronal Gene Arc Encodes a Repurposed Retrotransposon Gag Protein that Mediates Intercellular RNA Transfer
- (2018) Elissa D. Pastuzyn et al. CELL
- Efficient mouse genome engineering by CRISPR-EZ technology
- (2018) Andrew J Modzelewski et al. Nature Protocols
- Knockdown of CDK2AP1 in human embryonic stem cells reduces the threshold of differentiation
- (2018) Khaled N. Alsayegh et al. PLoS One
- Multisite dependency of an E3 ligase controls monoubiquitylation-dependent cell fate decisions
- (2018) Achim Werner et al. eLife
- Human Endogenous Retroviruses Are Ancient Acquired Elements Still Shaping Innate Immune Responses
- (2018) Nicole Grandi et al. Frontiers in Immunology
- Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development
- (2018) Thorsten Boroviak et al. DEVELOPMENT
- GENCODE reference annotation for the human and mouse genomes
- (2018) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
- Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos
- (2017) Xinyi Wang et al. GENOME RESEARCH
- TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
- (2017) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks
- (2017) Michaël Imbeault et al. NATURE
- Annotation-free quantification of RNA splicing using LeafCutter
- (2017) Yang I. Li et al. NATURE GENETICS
- The Encyclopedia of DNA elements (ENCODE): data portal update
- (2017) Carrie A Davis et al. NUCLEIC ACIDS RESEARCH
- Deficiency of microRNAmiR-34aexpands cell fate potential in pluripotent stem cells
- (2017) Yong Jin Choi et al. SCIENCE
- Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus
- (2017) Vasavi Sundaram et al. Nature Communications
- Switching of dominant retrotransposon silencing strategies from posttranscriptional to transcriptional mechanisms during male germ-cell development in mice
- (2017) Kota Inoue et al. PLoS Genetics
- Activation of Lineage Regulators and Transposable Elements across a Pluripotent Spectrum
- (2017) Jamie A. Hackett et al. Stem Cell Reports
- The impact of transposable elements on mammalian development
- (2016) Jose L. Garcia-Perez et al. DEVELOPMENT
- CTRL+INSERT: retrotransposons and their contribution to regulation and innovation of the transcriptome
- (2016) Jonathan Göke et al. EMBO REPORTS
- Highly Efficient Mouse Genome Editing by CRISPR Ribonucleoprotein Electroporation of Zygotes
- (2016) Sean Chen et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Natural courtship song variation caused by an intronic retroelement in an ion channel gene
- (2016) Yun Ding et al. NATURE
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
- (2016) Shenglin Mei et al. NUCLEIC ACIDS RESEARCH
- The Relationship between Cell Number, Division Behavior and Developmental Potential of Cleavage Stage Human Embryos: A Time-Lapse Study
- (2016) Xiangyi Kong et al. PLoS One
- Regulatory evolution of innate immunity through co-option of endogenous retroviruses
- (2016) E. B. Chuong et al. SCIENCE
- Restricting retrotransposons: a review
- (2016) John L. Goodier Mobile DNA
- Roles for retrotransposon insertions in human disease
- (2016) Dustin C. Hancks et al. Mobile DNA
- Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues
- (2016) Marco De Cecco et al. Aging-US
- TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets
- (2015) Ying Jin et al. BIOINFORMATICS
- A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development
- (2015) Walfred W.C. Tang et al. CELL
- The mechanism of ageing: primary role of transposable elements in genome disintegration
- (2015) Ádám Sturm et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Genome activation in bovine embryos: Review of the literature and new insights from RNA sequencing experiments
- (2014) Alexander Graf et al. ANIMAL REPRODUCTION SCIENCE
- Two waves of de novo methylation during mouse germ cell development
- (2014) A. Molaro et al. GENES & DEVELOPMENT
- Widespread contribution of transposable elements to the innovation of gene regulatory networks
- (2014) Vasavi Sundaram et al. GENOME RESEARCH
- Normalization of RNA-seq data using factor analysis of control genes or samples
- (2014) Davide Risso et al. NATURE BIOTECHNOLOGY
- Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
- (2014) Q. Deng et al. SCIENCE
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- A Retrotransposon-Driven Dicer Isoform Directs Endogenous Small Interfering RNA Production in Mouse Oocytes
- (2013) Matyas Flemr et al. CELL
- Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
- (2013) Zhigang Xue et al. NATURE
- DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
- (2013) Mingchao Xie et al. NATURE GENETICS
- Endogenous retroviruses function as species-specific enhancer elements in the placenta
- (2013) Edward B Chuong et al. NATURE GENETICS
- Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
- (2013) Liying Yan et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Transposable elements as genetic regulatory substrates in early development
- (2013) Wesley D. Gifford et al. TRENDS IN CELL BIOLOGY
- Transposable Elements: An Abundant and Natural Source of Regulatory Sequences for Host Genes
- (2012) Rita Rebollo et al. Annual Review of Genetics
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
- (2012) P. Batut et al. GENOME RESEARCH
- Embryonic stem cell potency fluctuates with endogenous retrovirus activity
- (2012) Todd S. Macfarlan et al. NATURE
- NIH Image to ImageJ: 25 years of image analysis
- (2012) Caroline A Schneider et al. NATURE METHODS
- LINE-1 Elements in Structural Variation and Disease
- (2011) Christine R. Beck et al. Annual Review of Genomics and Human Genetics
- GC-Content Normalization for RNA-Seq Data
- (2011) Davide Risso et al. BMC BIOINFORMATICS
- Coordination of cell proliferation and anterior-posterior axis establishment in the mouse embryo
- (2011) D. W. Stuckey et al. DEVELOPMENT
- Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
- (2011) L. Song et al. GENOME RESEARCH
- Double Edge
- (2011) D.T.W. Wong et al. JOURNAL OF DENTAL RESEARCH
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Retrotransposition is associated with genome instability during chronological aging
- (2011) P. H. Maxwell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CDK2AP1/DOC-1 is a bona fide subunit of the Mi-2/NuRD complex
- (2010) Cornelia G. Spruijt et al. Molecular BioSystems
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Targeted Inactivation of p12Cdk2ap1, CDK2 Associating Protein 1, Leads to Early Embryonic Lethality
- (2009) Yong Kim et al. PLoS One
- Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene
- (2009) A. Dupressoir et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta
- (2008) Yoichi Sekita et al. NATURE GENETICS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started