Selection strategy of dextran sulfate sodium-induced acute or chronic colitis mouse models based on gut microbial profile

Dysbiosis of gut microbiota in Polish patients with ulcerative colitis: a pilot study

(2021) Oliwia Zakerska-Banaszak et al.   Scientific Reports

Inhibition of PD-1 Protects against TNBS-Induced Colitis via Alteration of Enteric Microbiota

(2021) Hao-ming Xu et al.   Biomed Research International

The effect of different combinations of antibiotic cocktails on mice and selection of animal models for further microbiota research

(2021) Jing Xu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Study of growth, metabolism, and morphology of Akkermansia muciniphila with an in vitro advanced bionic intestinal reactor

(2021) Zhitao Li et al.   BMC MICROBIOLOGY

F. prausnitzii and its supernatant increase SCFAs-producing bacteria to restore gut dysbiosis in TNBS-induced colitis

(2021) Youlian Zhou et al.   AMB Express

Ecological and network analyses identify four microbial species with potential significance for the diagnosis/treatment of ulcerative colitis (UC)

(2021) Wendy Li et al.   BMC MICROBIOLOGY

Cross-Talk Between Butyric Acid and Gut Microbiota in Ulcerative Colitis Following Fecal Microbiota Transplantation

(2021) Hao-Ming Xu et al.   Frontiers in Microbiology

Opportunistic detection of Fusobacterium nucleatum as a marker for the early gut microbial dysbiosis

(2020) Ji-Won Huh et al.   BMC MICROBIOLOGY

Colonization of Mice With Amoxicillin-Associated Klebsiella variicola Drives Inflammation via Th1 Induction and Treg Inhibition

(2020) Huai Lin et al.   Frontiers in Microbiology

Gut microbiota characteristics in mice with antibiotic-associated diarrhea

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Astragalin Attenuates Dextran Sulfate Sodium (DSS)-Induced Acute Experimental Colitis by Alleviating Gut Microbiota Dysbiosis and Inhibiting NF-κB Activation in Mice

(2020) Lei Peng et al.   Frontiers in Immunology

Gallstone Disease, Obesity and the Firmicutes/Bacteroidetes Ratio as a Possible Biomarker of Gut Dysbiosis

(2020) Irina N. Grigor’eva   Journal of Personalized Medicine

Construction of a Model Culture System of Human Colonic Microbiota to Detect Decreased Lachnospiraceae Abundance and Butyrogenesis in the Feces of Ulcerative Colitis Patients

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Differences in Gut Microbiota in Patients With vs Without Inflammatory Bowel Diseases: A Systematic Review

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Gut colonization with extended-spectrum β-lactamase-producing Enterobacteriaceae may increase disease activity in biologic-naive outpatients with ulcerative colitis

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Fecal microbial dysbiosis in Chinese patients with inflammatory bowel disease

(2018) Hai-Qin Ma et al.   WORLD JOURNAL OF GASTROENTEROLOGY

A next generation probiotic, Akkermansia muciniphila

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Administration of the hyper-immune bovine colostrum extract IMM-124E ameliorates experimental murine colitis

(2018) Marianne R Spalinger et al.   Journal of Crohns & Colitis

Chemically induced mouse models of acute and chronic intestinal inflammation

(2017) Stefan Wirtz et al.   Nature Protocols

Dextran sodium sulfate colitis murine model: An indispensable tool for advancing our understanding of inflammatory bowel diseases pathogenesis

(2017) Derrick D Eichele et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Bacillus subtilis Improves Immunity and Disease Resistance in Rabbits

(2017) Mengjiao Guo et al.   Frontiers in Immunology

Formation of propionate and butyrate by the human colonic microbiota

(2016) Petra Louis et al.   ENVIRONMENTAL MICROBIOLOGY

Germ-free and Antibiotic-treated Mice are Highly Susceptible to Epithelial Injury in DSS Colitis

(2016) Cristina Hernández-Chirlaque et al.   Journal of Crohns & Colitis

A Review on Chemical-Induced Inflammatory Bowel Disease Models in Rodents

(2014) Puneet Kaur Randhawa et al.   KOREAN JOURNAL OF PHYSIOLOGY & PHARMACOLOGY

The murine appendiceal microbiome is altered in spontaneous colitis and its pathological progression

(2014) Sultan Alkadhi et al.   Gut Pathogens

Vitamin D Regulates the Gut Microbiome and Protects Mice from Dextran Sodium Sulfate–Induced Colitis

(2013) Jot Hui Ooi et al.   JOURNAL OF NUTRITION

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Potential beneficial effects of butyrate in intestinal and extraintestinal diseases

(2011) Roberto Berni Canani   WORLD JOURNAL OF GASTROENTEROLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

(2009) Petra Louis et al.   FEMS MICROBIOLOGY LETTERS

An amino acid map of inter-residue contact energies using metric multi-dimensional scaling

(2007) Sourav Rakshit et al.   JOURNAL OF THEORETICAL BIOLOGY