Recent Developments in the Study of Plant Microbiomes

Phytophthora Root Rot Modifies the Composition of the Avocado Rhizosphere Microbiome and Increases the Abundance of Opportunistic Fungal Pathogens

(2021) Itzel A. Solís-García et al.   Frontiers in Microbiology

Plant Growth Stimulation by Microbial Consortia

(2021) Gustavo Santoyo et al.   Agronomy-Basel

Metagenomic profiling of rhizosphere microbial community structure and diversity associated with maize plant as affected by cropping systems

(2021) Ayomide Emmanuel Fadiji et al.   INTERNATIONAL MICROBIOLOGY

Maintaining symbiotic homeostasis: how do plants engage with beneficial microorganisms while at the same time restricting pathogens?

(2021) David Thoms et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The microbial community associated with pea seeds (Pisum sativum) of different geographical origins

(2021) Valentine Chartrel et al.   PLANT AND SOIL

Legume–microbiome interactions unlock mineral nutrients in regrowing tropical forests

(2021) Dimitar Z. Epihov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

16S rRNA gene-based microbiome analysis identifies candidate bacterial strains that increase the storage time of potato tubers

(2021) Franziska Buchholz et al.   Scientific Reports

The rhizosphere microbiome plays a role in the resistance to soil-borne pathogens and nutrient uptake of strawberry cultivars under field conditions

(2021) Cristina Lazcano et al.   Scientific Reports

Harnessing the plant microbiome to promote the growth of agricultural crops

(2021) Janie Zhang et al.   MICROBIOLOGICAL RESEARCH

Urbanization pressures alter tree rhizosphere microbiomes

(2021) Carl L. Rosier et al.   Scientific Reports

Composition of Rhizosphere Microbial Communities Associated With Healthy and Verticillium Wilt Diseased Cotton Plants

(2021) Feng Wei et al.   Frontiers in Microbiology

Microbiome-Assisted Breeding to Understand Cultivar-Dependent Assembly in Cucurbita pepo

(2021) Peter Kusstatscher et al.   Frontiers in Plant Science

The Coevolution of Plants and Microbes Underpins Sustainable Agriculture

(2021) Dongmei Lyu et al.   Microorganisms

Host specific endophytic microbiome diversity and associated functions in three varieties of scented black rice are dependent on growth stage

(2021) K. Malabika Singha et al.   Scientific Reports

A Comparative Analysis on the Structure and Function of the Panax notoginseng Rhizosphere Microbiome

(2021) Ling Kui et al.   Frontiers in Microbiology

Differential Impact of Plant Secondary Metabolites on the Soil Microbiota

(2021) Vadim Schütz et al.   Frontiers in Microbiology

Engineering Host Microbiome for Crop Improvement and Sustainable Agriculture

(2021) Sanjana Kaul et al.   Frontiers in Microbiology

Climatic Zone and Soil Properties Determine the Biodiversity of the Soil Bacterial Communities Associated to Native Plants from Desert Areas of North-Central Algeria

(2021) Elisa Bona et al.   Microorganisms

Molecular genetic analyses of abiotic stress responses during plant reproductive development

(2020) Xinwei Ma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Wheat dwarfing influences selection of the rhizosphere microbiome

(2020) Vanessa N. Kavamura et al.   Scientific Reports

Rhizosphere Microbial Community Structure Is Selected by Habitat but Not Plant Species in Two Tropical Seagrass Beds

(2020) Xia Zhang et al.   Frontiers in Microbiology

Influences of Climate on Phyllosphere Endophytic Bacterial Communities of Wild Poplar

(2020) Andrea Firrincieli et al.   Frontiers in Plant Science

Disclosure of exact protocols of fermentation, identity of microorganisms within consortia, formation of advanced consortia with microbe-based products

(2020) Yoav Bashan et al.   BIOLOGY AND FERTILITY OF SOILS

Corn microbial diversity and its relationship to yield

(2020) Shimaila Ali et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Variation in rhizosphere microbial communities and its association with the symbiotic efficiency of rhizobia in soybean

(2020) Qin Han et al.   ISME Journal

Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe–microbe interaction networks in plant leaves

(2020) Julian Regalado et al.   ISME Journal

ACC deaminase in plant growth-promoting bacteria (PGPB): An efficient mechanism to counter salt stress in crops

(2020) Ma. del Carmen Orozco-Mosqueda et al.   MICROBIOLOGICAL RESEARCH

Discovering the bacteriome of Vitis vinifera cv. Pinot Noir in a conventionally managed vineyard

(2020) Elisa Gamalero et al.   Scientific Reports

Effects of Drought-Tolerant Ea-DREB2B Transgenic Sugarcane on Bacterial Communities in Soil

(2020) Xiaowen Zhao et al.   Frontiers in Microbiology

Low Nitrogen Fertilization Alter Rhizosphere Microorganism Community and Improve Sweetpotato Yield in a Nitrogen-Deficient Rocky Soil

(2020) Yanqiang Ding et al.   Frontiers in Microbiology

Impact of Soybean Nodulation Phenotypes and Nitrogen Fertilizer Levels on the Rhizosphere Bacterial Community

(2020) Hao Wang et al.   Frontiers in Microbiology

Biotic and Environmental Drivers of Plant Microbiomes Across a Permafrost Thaw Gradient

(2020) Moira Hough et al.   Frontiers in Microbiology

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture

(2020) Jing Ke et al.   TRENDS IN BIOTECHNOLOGY

Bacterial Communities of the Canola Rhizosphere: Network Analysis Reveals a Core Bacterium Shaping Microbial Interactions

(2020) Jean-Baptiste Floc’h et al.   Frontiers in Microbiology

The differences and overlaps in the seed‐resident microbiome of four Leguminous and three Gramineous forages

(2020) Ya Dai et al.   Microbial Biotechnology

Crop, genotype, and field environmental conditions shape bacterial and fungal seed epiphytic microbiomes

(2020) Zayda Piedad Morales Moreira et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Achieving similar root microbiota composition in neighbouring plants through airborne signalling

(2020) Hyun Gi Kong et al.   ISME Journal

A single bacterial genus maintains root growth in a complex microbiome

(2020) Omri M. Finkel et al.   NATURE

Dynamic Changes in the Microbiome of Rice During Shoot and Root Growth Derived From Seeds

(2020) Mengying Wang et al.   Frontiers in Microbiology

Effects of Continuous Nitrogen Fertilizer Application on the Diversity and Composition of Rhizosphere Soil Bacteria

(2020) Ning Ren et al.   Frontiers in Microbiology

Inoculation With the Plant-Growth-Promoting Rhizobacterium Pseudomonas fluorescens LBUM677 Impacts the Rhizosphere Microbiome of Three Oilseed Crops

(2020) Jesús A. Jiménez et al.   Frontiers in Microbiology

Phyllosphere microbiota: Community dynamics and its interaction with plant hosts

(2020) Tianyu Gong et al.   Journal of Integrative Plant Biology

Divergence of phyllosphere microbial communities between females and males of the dioecious Populus cathayana

(2020) Liling Liu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Exogenous ACC Deaminase Is Key to Improving the Performance of Pasture Legume-Rhizobial Symbioses in the Presence of a High Manganese Concentration

(2020) Ana Paço et al.   Plants-Basel

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

(2019) Stéphane Compant et al.   Journal of Advanced Research

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

ACC deaminase plays a major role in Pseudomonas fluorescens YsS6 ability to promote the nodulation of Alpha- and Betaproteobacteria rhizobial strains

(2019) Francisco X. Nascimento et al.   ARCHIVES OF MICROBIOLOGY

Limited effect of planting transgenic rice on the soil microbiome studied by continuous 13CO2 labeling combined with high-throughput sequencing

(2019) Juan Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice

(2019) Jingying Zhang et al.   NATURE BIOTECHNOLOGY

A specialized metabolic network selectively modulates Arabidopsis root microbiota

(2019) Ancheng C. Huang et al.   SCIENCE

Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome

(2019) Mathias J. E. E. E. Voges et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

COINOCULATION WITH Bradyrhizobium AND Trichoderma ALLEVIATES THE EFFECTS OF SALT STRESS IN COWPEA

(2019) LANESSA VIEIRA DA SILVA et al.   Revista Caatinga

Seeds of native alpine plants host unique microbial communities embedded in cross-kingdom networks

(2019) Birgit Wassermann et al.   Microbiome

Soil indigenous microbiome and plant genotypes cooperatively modify soybean rhizosphere microbiome assembly

(2019) Fang Liu et al.   BMC MICROBIOLOGY

Co-occurrence patterns of microbial communities affected by inoculants of plant growth-promoting bacteria during phytoremediation of heavy metal-contaminated soils

(2019) Zhaoyu Kong et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Molecular bases of responses to abiotic stress in trees

(2019) Maximiliano Estravis-Barcala et al.   JOURNAL OF EXPERIMENTAL BOTANY

Potential Mechanisms of Abiotic Stress Tolerance in Crop Plants Induced by Thiourea

(2019) Muhammad Ahmed Waqas et al.   Frontiers in Plant Science

Soil Microbial Communities in Diverse Agroecosystems Exposed to the Herbicide Glyphosate

(2019) Ryan M. Kepler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Saving seed microbiomes

(2018) Gabriele Berg et al.   ISME Journal

Microbiome engineering to improve biocontrol and plant growth-promoting mechanisms

(2018) Ma del Carmen Orozco-Mosqueda et al.   MICROBIOLOGICAL RESEARCH

Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria

(2018) Ling Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Alleviation of drought stress in pulse crops with ACC deaminase producing rhizobacteria isolated from acidic soil of Northeast India

(2018) Juthika Saikia et al.   Scientific Reports

Long-Term Irrigation Affects the Dynamics and Activity of the Wheat Rhizosphere Microbiome

(2018) Dmitri V. Mavrodi et al.   Frontiers in Plant Science

Microbiome Diversity in Cotton Rhizosphere Under Normal and Drought Conditions

(2018) Abid Ullah et al.   MICROBIAL ECOLOGY

The Rootstock Regulates Microbiome Diversity in Root and Rhizosphere Compartments of Vitis vinifera Cultivar Lambrusco

(2018) Federica D’Amico et al.   Frontiers in Microbiology

The structure and function of the global citrus rhizosphere microbiome

(2018) Jin Xu et al.   Nature Communications

Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test

(2018) Yunshi Li et al.   Frontiers in Microbiology

Plant Growth-Promoting Rhizobacteria: Context, Mechanisms of Action, and Roadmap to Commercialization of Biostimulants for Sustainable Agriculture

(2018) Rachel Backer et al.   Frontiers in Plant Science

Plant signalling in symbiosis and immunity

(2017) Cyril Zipfel et al.   NATURE

Soil Characteristics Overwhelm Cultivar Effects on the Structure and Assembly of Root-Associated Microbiomes of Modern Maize

(2017) Lin Chen et al.   PEDOSPHERE

The seed microbiome: Origins, interactions, and impacts

(2017) Eric B. Nelson   PLANT AND SOIL

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

Mechanisms of action of plant growth promoting bacteria

(2017) Oluwaseyi Samuel Olanrewaju et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Bacillus amyloliquefaciens L-S60 Reforms the Rhizosphere Bacterial Community and Improves Growth Conditions in Cucumber Plug Seedling

(2017) Yuxuan Qin et al.   Frontiers in Microbiology

Plants Assemble Species Specific Bacterial Communities from Common Core Taxa in Three Arcto-Alpine Climate Zones

(2017) Manoj Kumar et al.   Frontiers in Microbiology

The Rhizosphere Bacterial Microbiota of Vitis vinifera cv. Pinot Noir in an Integrated Pest Management Vineyard

(2017) Giorgia Novello et al.   Frontiers in Microbiology

Rhizosphere Microbiome Recruited from a Suppressive Compost Improves Plant Fitness and Increases Protection against Vascular Wilt Pathogens of Tomato

(2017) Anastasis Antoniou et al.   Frontiers in Plant Science

Root Hair Mutations Displace the Barley Rhizosphere Microbiota

(2017) Senga Robertson-Albertyn et al.   Frontiers in Plant Science

Impact of Combined Abiotic and Biotic Stresses on Plant Growth and Avenues for Crop Improvement by Exploiting Physio-morphological Traits

(2017) Prachi Pandey et al.   Frontiers in Plant Science

Field-grown transgenic switchgrass (Panicum virgatum L.) with altered lignin does not affect soil chemistry, microbiology, and carbon storage potential

(2016) Jennifer M. DeBruyn et al.   Global Change Biology Bioenergy

Root Exudation by Aphid Leaf Infestation Recruits Root-Associated Paenibacillus spp. to Lead Plant Insect Susceptibility

(2016) Bora Kim et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Mechanisms of plant response to salt and drought stress and their alteration by rhizobacteria

(2016) Cinzia Forni et al.   PLANT AND SOIL

Impact of Soil Salinity on the Structure of the Bacterial Endophytic Community Identified from the Roots of Caliph Medic (Medicago truncatula)

(2016) Mahmoud W. Yaish et al.   PLoS One

Roots Shaping Their Microbiome: Global Hotspots for Microbial Activity

(2015) Barbara Reinhold-Hurek et al.   Annual Review of Phytopathology

Bacterial Modulation of Plant Ethylene Levels

(2015) Elisa Gamalero et al.   PLANT PHYSIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Microbial consortium-mediated plant defense against phytopathogens: Readdressing for enhancing efficacy

(2015) Birinchi Kumar Sarma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Elevated atmospheric CO2 levels affect community structure of rice root-associated bacteria

(2015) Takashi Okubo et al.   Frontiers in Microbiology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Bacteria with ACC deaminase can promote plant growth and help to feed the world

(2013) Bernard R. Glick   MICROBIOLOGICAL RESEARCH

Strategies to ameliorate abiotic stress-induced plant senescence

(2013) Shimon Gepstein et al.   PLANT MOLECULAR BIOLOGY

Diversity of plant growth-promoting rhizobacteria communities associated with the stages of canola growth

(2012) Roberto Farina et al.   APPLIED SOIL ECOLOGY

Effects of abiotic stress on plants: a systems biology perspective

(2012) Grant R Cramer et al.   BMC PLANT BIOLOGY

Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages

(2012) Pablo R. Hardoim et al.   PLoS One

Induction of Drought Tolerance in Cucumber Plants by a Consortium of Three Plant Growth-Promoting Rhizobacterium Strains

(2012) Chun-Juan Wang et al.   PLoS One

Making Phytoremediation Work Better: Maximizing a Plant’s Growth Potential in the Midst of Adversity

(2011) Bernard R. Glick et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Complete Genome Sequence of the Plant Growth-Promoting Endophyte Burkholderia phytofirmans Strain PsJN

(2011) A. Weilharter et al.   JOURNAL OF BACTERIOLOGY

Bacterial Distribution in the Rhizosphere of Wild Barley under Contrasting Microclimates

(2011) Salme Timmusk et al.   PLoS One

Mechanistically Compatible Mixtures of Bacterial Antagonists Improve Biological Control of Fire Blight of Pear

(2010) V. O. Stockwell et al.   PHYTOPATHOLOGY

Interactions between Pseudomonas putida UW4 and Gigaspora rosea BEG9 and their consequences for the growth of cucumber under salt-stress conditions

(2009) E. Gamalero et al.   JOURNAL OF APPLIED MICROBIOLOGY

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL