Soil indigenous microbiome and plant genotypes cooperatively modify soybean rhizosphere microbiome assembly

The Soil-Borne Legacy

(2018) Peter A.H.M. Bakker et al.   CELL

Investigation of Rhizospheric Microbial Communities in Wheat, Barley, and Two Rice Varieties at the Seedling Stage

(2018) Tao Lu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Plant growth promoting rhizobacteria for sustainable agricultural practices with special reference to biotic and abiotic stresses

(2018) Syed Shameer et al.   PLANT GROWTH REGULATION

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?

(2018) Joelle Sasse et al.   TRENDS IN PLANT SCIENCE

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly

(2018) Kateryna Zhalnina et al.   Nature Microbiology

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

(2018) Collin M. Timm et al.   mSystems

Shared and host-specific microbiome diversity and functioning of grapevine and accompanying weed plants

(2017) Abdul Samad et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

(2017) Lucas William Mendes et al.   ISME Journal

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Two cultivated legume plants reveal the enrichment process of the microbiome in the rhizocompartments

(2017) Xiao Xiao et al.   MOLECULAR ECOLOGY

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Community Structure, Species Variation, and Potential Functions of Rhizosphere-Associated Bacteria of Different Winter Wheat (Triticum aestivum) Cultivars

(2017) Aaron K. Mahoney et al.   Frontiers in Plant Science

Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

(2017) Bram Beckers et al.   Microbiome

Deciphering composition and function of the root microbiome of a legume plant

(2017) Kyle Hartman et al.   Microbiome

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management

(2016) R. Poudel et al.   PHYTOPATHOLOGY

Root nodule symbiosis inLotus japonicusdrives the establishment of distinctive rhizosphere, root, and nodule bacterial communities

(2016) Rafal Zgadzaj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Soil-Borne Supremacy

(2016) Corné M.J. Pieterse et al.   TRENDS IN PLANT SCIENCE

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome

(2016) Rafael Soares Correa de Souza et al.   Scientific Reports

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Spatio Temporal Influence of Isoflavonoids on Bacterial Diversity in the Soybean Rhizosphere

(2015) Laura J. White et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

(2015) Francesco Asnicar et al.   PeerJ

Associations with rhizosphere bacteria can confer an adaptive advantage to plants

(2015) Cara H. Haney et al.   Nature Plants

Bacterial networks and co-occurrence relationships in the lettuce root microbiota

(2014) Massimiliano Cardinale et al.   ENVIRONMENTAL MICROBIOLOGY

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Changes in the Bacterial Community of Soybean Rhizospheres during Growth in the Field

(2014) Akifumi Sugiyama et al.   PLoS One

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

Differences between the rhizosphere microbiome of Beta vulgaris ssp. maritima—ancestor of all beet crops—and modern sugar beets

(2014) Christin Zachow et al.   Frontiers in Microbiology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants

(2013) Thomas R Turner et al.   ISME Journal

The Impact of Beneficial Plant-Associated Microbes on Plant Phenotypic Plasticity

(2013) Chooi-Hua Goh et al.   JOURNAL OF CHEMICAL ECOLOGY

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root exudates: the hidden part of plant defense

(2013) Ulrike Baetz et al.   TRENDS IN PLANT SCIENCE

Rj (rj) genes involved in nitrogen-fixing root nodule formation in soybean

(2012) Masaki Hayashi et al.   BREEDING SCIENCE

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Burkholderia Species Are Major Inhabitants of White Lupin Cluster Roots

(2011) Laure Weisskopf et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Crops that feed the World 2. Soybean—worldwide production, use, and constraints caused by pathogens and pests

(2011) Glen L. Hartman et al.   Food Security

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Plant Growth Promoting Rhizobacteria (PGPR): the bugs to debug the root zone

(2010) Swarnalee Dutta et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Belowground volatiles facilitate interactions between plant roots and soil organisms

(2009) Katrin Wenke et al.   PLANTA

Bacterial Degradation of Aromatic Compounds

(2009) Jong-Su Seo et al.   International Journal of Environmental Research and Public Health

Nitrogen uptake, fixation and response to fertilizer N in soybeans: A review

(2008) F. Salvagiotti et al.   FIELD CROPS RESEARCH

Carbon catabolite repression in bacteria: many ways to make the most out of nutrients

(2008) Boris Görke et al.   NATURE REVIEWS MICROBIOLOGY

Global inputs of biological nitrogen fixation in agricultural systems

(2008) David F. Herridge et al.   PLANT AND SOIL

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA