Transcriptomic encoding of sensorimotor transformation in the midbrain

Decoding the development of the human hippocampus

(2020) Suijuan Zhong et al.   NATURE

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

(2020) Quanxin Wang et al.   CELL

A Causal Role for Mouse Superior Colliculus in Visual Perceptual Decision-Making

(2020) Lupeng Wang et al.   JOURNAL OF NEUROSCIENCE

Integrative analysis of in vivo recording with single-cell RNA-seq data reveals molecular properties of light-sensitive neurons in mouse V1

(2020) Jianwei Liu et al.   Protein & Cell

A Vagal-NTS Neural Pathway that Stimulates Feeding

(2020) Jing Chen et al.   CURRENT BIOLOGY

Differential encoding in prefrontal cortex projection neuron classes across cognitive tasks

(2020) Jan H. Lui et al.   CELL

Distinct prefrontal top-down circuits differentially modulate sensorimotor behavior

(2020) Rafiq Huda et al.   Nature Communications

Distinct Cortical-Thalamic-Striatal Circuits through the Parafascicular Nucleus

(2019) Gil Mandelbaum et al.   NEURON

Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+

(2019) Chee-Huat Linus Eng et al.   NATURE

A subcortical excitatory circuit for sensory-triggered predatory hunting in mice

(2019) Congping Shang et al.   NATURE NEUROSCIENCE

Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data

(2019) Samuel L. Wolock et al.   Cell Systems

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments

(2019) Hod Dana et al.   NATURE METHODS

A VTA GABAergic Neural Circuit Mediates Visually Evoked Innate Defensive Responses

(2019) Zheng Zhou et al.   NEURON

Genetically Defined Functional Modules for Spatial Orienting in the Mouse Superior Colliculus

(2019) Laura Masullo et al.   CURRENT BIOLOGY

Distinct Contributions of Whisker Sensory Cortex and Tongue-Jaw Motor Cortex in a Goal-Directed Sensorimotor Transformation

(2019) Johannes M. Mayrhofer et al.   NEURON

Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior

(2019) Dong-Wook Kim et al.   CELL

Defined Cell Types in Superior Colliculus Make Distinct Contributions to Prey Capture Behavior in the Mouse

(2019) Jennifer L. Hoy et al.   CURRENT BIOLOGY

Three-Dimensional Representation of Motor Space in the Mouse Superior Colliculus

(2018) Jonathan J. Wilson et al.   CURRENT BIOLOGY

Genetic Ablation of All Cerebellins Reveals Synapse Organizer Functions in Multiple Regions Throughout the Brain

(2018) Erica Seigneur et al.   JOURNAL OF NEUROSCIENCE

A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex

(2018) Suijuan Zhong et al.   NATURE

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

(2018) Laleh Haghverdi et al.   NATURE BIOTECHNOLOGY

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

The Mouse Superior Colliculus: An Emerging Model for Studying Circuit Formation and Function

(2018) Shinya Ito et al.   Frontiers in Neural Circuits

Divergent midbrain circuits orchestrate escape and freezing responses to looming stimuli in mice

(2018) Congping Shang et al.   Nature Communications

Visual Function, Organization, and Development of the Mouse Superior Colliculus

(2018) Jianhua Cang et al.   Annual Review of Vision Science

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility

(2018) Darren A. Cusanovich et al.   CELL

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

(2018) Arpiar Saunders et al.   CELL

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

A synaptic threshold mechanism for computing escape decisions

(2018) Dominic A. Evans et al.   NATURE

Neural Circuits for Goal-Directed Sensorimotor Transformations

(2018) Sylvain Crochet et al.   TRENDS IN NEUROSCIENCES

The Mouse Superior Colliculus as a Model System for Investigating Cell Type-Based Mechanisms of Visual Motor Transformation

(2018) Ana F. Oliveira et al.   Frontiers in Neural Circuits

Visual response properties of neurons in the superficial layers of the superior colliculus of awake mouse

(2018) Gioia Franceschi et al.   JOURNAL OF PHYSIOLOGY-LONDON

Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

Distinct descending motor cortex pathways and their roles in movement

(2018) Michael N. Economo et al.   NATURE

Cell-type-specific and projection-specific brain-wide reconstruction of single neurons

(2018) Rui Lin et al.   NATURE METHODS

Topography of a Visuomotor Transformation

(2018) Thomas O. Helmbrecht et al.   NEURON

Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish

(2018) Xiuye Chen et al.   NEURON

Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region

(2018) Jeffrey R. Moffitt et al.   SCIENCE

Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex

(2017) Sinisa Hrvatin et al.   NATURE NEUROSCIENCE

IGF1-Dependent Synaptic Plasticity of Mitral Cells in Olfactory Memory during Social Learning

(2017) Zhihui Liu et al.   NEURON

Detecting Activated Cell Populations Using Single-Cell RNA-Seq

(2017) Ye Emily Wu et al.   NEURON

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

Circuits for Action and Cognition: A View from the Superior Colliculus

(2017) Michele A. Basso et al.   Annual Review of Vision Science

Vision Guides Selection of Freeze or Flight Defense Strategies in Mice

(2016) Gioia De Franceschi et al.   CURRENT BIOLOGY

Vision Drives Accurate Approach Behavior during Prey Capture in Laboratory Mice

(2016) Jennifer L. Hoy et al.   CURRENT BIOLOGY

Laterodorsal tegmentum interneuron subtypes oppositely regulate olfactory cue-induced innate fear

(2016) Hongbin Yang et al.   NATURE NEUROSCIENCE

In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus

(2016) Sheel Shah et al.   NEURON

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons

(2016) D. Gowanlock R. Tervo et al.   NEURON

Single-cell RNAseq reveals cell adhesion molecule profiles in electrophysiologically defined neurons

(2016) Csaba Földy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conformational Plasticity in the Transsynaptic Neurexin-Cerebellin-Glutamate Receptor Adhesion Complex

(2016) Shouqiang Cheng et al.   STRUCTURE

Visuomotor Transformations Underlying Hunting Behavior in Zebrafish

(2015) Isaac H. Bianco et al.   CURRENT BIOLOGY

Visual Experience Is Required for the Development of Eye Movement Maps in the Mouse Superior Colliculus

(2015) L. Wang et al.   JOURNAL OF NEUROSCIENCE

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

(2015) Cathryn R Cadwell et al.   NATURE BIOTECHNOLOGY

A parvalbumin-positive excitatory visual pathway to trigger fear responses in mice

(2015) C. Shang et al.   SCIENCE

Processing of visually evoked innate fear by a non-canonical thalamic pathway

(2015) Pengfei Wei et al.   Nature Communications

Natural Neural Projection Dynamics Underlying Social Behavior

(2014) Lisa A. Gunaydin et al.   CELL

Distinct Representation and Distribution of Visual Information by Specific Cell Types in Mouse Superficial Superior Colliculus

(2014) S. D. Gale et al.   JOURNAL OF NEUROSCIENCE

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Monosynaptic premotor circuit tracing reveals neural substrates for oro-motor coordination

(2014) Edward Stanek et al.   eLife

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Rapid Innate Defensive Responses of Mice to Looming Visual Stimuli

(2013) Melis Yilmaz et al.   CURRENT BIOLOGY

Single-cell sequencing-based technologies will revolutionize whole-organism science

(2013) Ehud Shapiro et al.   NATURE REVIEWS GENETICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Pleiotropic and isoform-specific functions for Pitx2 in superior colliculus and hypothalamic neuronal development

(2012) Mindy R. Waite et al.   MOLECULAR AND CELLULAR NEUROSCIENCE

Optogenetic Inactivation Modifies Monkey Visuomotor Behavior

(2012) James Cavanaugh et al.   NEURON

Cbln family proteins promote synapse formation by regulating distinct neurexin signaling pathways in various brain regions

(2011) Keiko Matsuda et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Computational Mechanisms of Sensorimotor Control

(2011) David W. Franklin et al.   NEURON

Leptin Action on GABAergic Neurons Prevents Obesity and Reduces Inhibitory Tone to POMC Neurons

(2011) Linh Vong et al.   NEURON

Visual Receptive Field Properties of Neurons in the Superficial Superior Colliculus of the Mouse

(2010) L. Wang et al.   JOURNAL OF NEUROSCIENCE

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

Vibrissa Sensation in Superior Colliculus: Wide-Field Sensitivity and State-Dependent Cortical Feedback

(2008) J. D. Cohen et al.   JOURNAL OF NEUROSCIENCE

Neural Substrates of Sensory-Guided Locomotor Decisions in the Rat Superior Colliculus

(2008) Gidon Felsen et al.   NEURON