The rate and molecular spectrum of mutation are selectively maintained in yeast

Are nonsynonymous transversions generally more deleterious than nonsynonymous transitions?

(2020) Zhengting Zou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Trajectory and uniqueness of mutational signatures in yeast mutators

(2020) Sophie Loeillet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Yeast Spontaneous Mutation Rate and Spectrum Vary with Environment

(2019) Haoxuan Liu et al.   CURRENT BIOLOGY

The role of mutation bias in adaptive molecular evolution: insights from convergent changes in protein function

(2019) Jay F. Storz et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Accurate Tracking of the Mutational Landscape of Diploid Hybrid Genomes

(2019) Lorenzo Tattini et al.   MOLECULAR BIOLOGY AND EVOLUTION

Psp2, a novel regulator of autophagy that promotes autophagy-related protein translation

(2019) Zhangyuan Yin et al.   CELL RESEARCH

Similarities and differences in patterns of germline mutation between mice and humans

(2019) Sarah J. Lindsay et al.   Nature Communications

Sign of selection on mutation rate modifiers depends on population size

(2018) Yevgeniy Raynes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genome-wide rate and spectrum of spontaneous mutations differ between haploid and diploid yeast

(2018) Nathaniel P. Sharp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A speed–fidelity trade-off determines the mutation rate and virulence of an RNA virus

(2018) William J. Fitzsimmons et al.   PLOS BIOLOGY

Factors driving effective population size and pan-genome evolution in bacteria

(2018) Louis-Marie Bobay et al.   BMC EVOLUTIONARY BIOLOGY

The Genetic Basis of Mutation Rate Variation in Yeast

(2018) Liangke Gou et al.   GENETICS

Evolution of the Mutational Process under Relaxed Selection in Caenorhabditis elegans

(2018) Ayush Shekhar Saxena et al.   MOLECULAR BIOLOGY AND EVOLUTION

From molecular manipulation of domesticated Chlamydomonas reinhardtii to survival in nature

(2018) Severin Sasso et al.   eLife

Deciphering the Genic Basis of Yeast Fitness Variation by Simultaneous Forward and Reverse Genetics

(2017) Calum J. Maclean et al.   MOLECULAR BIOLOGY AND EVOLUTION

Numerous interactions act redundantly to assemble a tunable size of P bodies inSaccharomyces cerevisiae

(2017) Bhalchandra S. Rao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic drift, selection and the evolution of the mutation rate

(2016) Michael Lynch et al.   NATURE REVIEWS GENETICS

The frequency of sex in fungi

(2016) Bart P. S. Nieuwenhuis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

Extensive de novo mutation rate variation between individuals and across the genome ofChlamydomonas reinhardtii

(2015) Rob W. Ness et al.   GENOME RESEARCH

Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation–Accumulation Experiments

(2015) Way Sung et al.   MOLECULAR BIOLOGY AND EVOLUTION

New vectors for simple and streamlined CRISPR-Cas9 genome editing inSaccharomyces cerevisiae

(2015) Marian F. Laughery et al.   YEAST

bz-rates : A Web Tool to Estimate Mutation Rates from Fluctuation Analysis

(2015) Alexandre Gillet-Markowska et al.   G3-Genes Genomes Genetics

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

Population Genomics of the Fission Yeast Schizosaccharomyces pombe

(2014) Jeffrey A. Fawcett et al.   PLoS One

Precise estimates of mutation rate and spectrum in yeast

(2014) Y. O. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

8.2% of the Human Genome Is Constrained: Variation in Rates of Turnover across Functional Element Classes in the Human Lineage

(2014) Chris M. Rands et al.   PLoS Genetics

Long-Term Dynamics of Adaptation in Asexual Populations

(2013) M. J. Wiser et al.   SCIENCE

The Yeast Environmental Stress Response Regulates Mutagenesis Induced by Proteotoxic Stress

(2013) Erika Shor et al.   PLoS Genetics

Adaptive Evolution and Effective Population Size in Wild House Mice

(2012) M. Phifer-Rixey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Global analysis of yeast mRNPs

(2012) Sarah F Mitchell et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistics for the Luria-Delbrück distribution

(2012) Agnès Hamon et al.   Electronic Journal of Statistics

The Genomic Landscape and Evolutionary Resolution of Antagonistic Pleiotropy in Yeast

(2012) Wenfeng Qian et al.   Cell Reports

The Lower Bound to the Evolution of Mutation Rates

(2011) Michael Lynch   Genome Biology and Evolution

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

The pleiotropic structure of the genotype–phenotype map: the evolvability of complex organisms

(2011) Günter P. Wagner et al.   NATURE REVIEWS GENETICS

Massive turnover of functional sequence in human and other mammalian genomes

(2010) S. Meader et al.   GENOME RESEARCH

Shifts in the intensity of purifying selection: An analysis of genome-wide polymorphism data from two closely related yeast species

(2010) E. Elyashiv et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

Optimization of DNA polymerase mutation rates during bacterial evolution

(2009) E. Loh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleotide diversity in the mitochondrial and nuclear compartments of Chlamydomonas reinhardtii: investigating the origins of genome architecture

(2008) David R Smith et al.   BMC EVOLUTIONARY BIOLOGY

The Cellular, Developmental and Population-Genetic Determinants of Mutation-Rate Evolution

(2008) M. Lynch   GENETICS